Pre_GI Gene

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Host: NC_007492 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007492:2203220 Pseudomonas fluorescens PfO-1, complete genome

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22032202203576357Ribosomal protein L20QuickGO ontologyBLASTP
220368622047021017Phenylalanyl-tRNA synthetase alpha subunitQuickGO ontologyBLASTP
220472922071072379phenylalanyl-tRNA synthetase beta subunitQuickGO ontologyBLASTP
22071112207413303Integration host factor alpha subunitQuickGO ontologyBLASTP
22073942207750357Transcriptional Regulator MerR familyQuickGO ontologyBLASTP
2207840220791677tRNA-ProQuickGO ontologyBLASTP
220823522094431209DNA helicase-related proteinQuickGO ontologyBLASTP
220945322148645412DNA helicase-related proteinQuickGO ontologyBLASTP
22150532215760708hypothetical proteinBLASTP
22157672216057291hypothetical proteinBLASTP
22160872216476390hypothetical protein
221749022190911602Regulator of RNA terminal phosphate cyclaseQuickGO ontologyBLASTP
221929722208441548TROVEQuickGO ontologyBLASTP
222107922223081230hypothetical proteinBLASTP
22223482223136789hypothetical proteinBLASTP
222314522241731029RNA 3-terminal-phosphate cyclaseQuickGO ontologyBLASTP