Pre_GI: BLASTN Hits

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Query: NC_010102:2862178 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

Start: 2862178, End: 2880126, Length: 17949

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,06308BLASTN svgBLASTP svg
NC_011080:28704282870428289413023703Salmonella enterica subsp. enterica serovar Newport str. SL254,04912BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str04712BLASTN svgBLASTP svg
NC_006511:27184012718401273705118651Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC04498BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome04159BLASTN svgBLASTP svg
NC_003198:4676536*4676536471603539500Salmonella enterica subsp. enterica serovar Typhi str. CT18,04155BLASTN svgBLASTP svg
NC_004631:4661000*4661000468421223213Salmonella enterica subsp. enterica serovar Typhi Ty2, complete04139BLASTN svgBLASTP svg
NC_006511:44654954465495449196526471Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC03085BLASTN svgBLASTP svg
NC_021066:53421275342127536560823482Raoultella ornithinolytica B6, complete genome02611BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete02494BLASTN svgBLASTP svg
NC_013508:35930003593000361400721008Edwardsiella tarda EIB202, complete genome01532BLASTN svgBLASTP svg
NC_013508:2870954*2870954288859917646Edwardsiella tarda EIB202, complete genome01390BLASTN svgBLASTP svg
NC_013508:31889783188978324937660399Edwardsiella tarda EIB202, complete genome01364BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome01088BLASTN svgBLASTP svg
NC_010498:4072681*4072681409685324173Escherichia coli SMS-3-5, complete genome0825BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome0821BLASTN svgBLASTP svg
NC_011740:448000*44800047065722658Escherichia fergusonii ATCC 35469, complete genome0811BLASTN svgBLASTP svg
NC_012779:29570002957000298403927040Edwardsiella ictaluri 93-146, complete genome6e-124452BLASTN svgBLASTP svg
NC_013282:33896193389619341209922481Cronobacter turicensis, complete genome4e-103383BLASTN svgBLASTP svg
NC_009778:56700056700060530938310Enterobacter sakazakii ATCC BAA-894, complete genome1e-97365BLASTN svgBLASTP svg
NC_011080:47032664703266472876525500Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-96361BLASTN svgBLASTP svg
NC_010067:191190*19119023335342164Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete1e-66262BLASTN svgBLASTP svg
NC_015968:28457512845751288222136471Enterobacter asburiae LF7a chromosome, complete genome3e-64254BLASTN svgBLASTP svg
NC_013956:32733403273340330380130462Pantoea ananatis LMG 20103 chromosome, complete genome2e-59238BLASTN svgBLASTP svg
NC_012779:2281700*2281700230559923900Edwardsiella ictaluri 93-146, complete genome6e-56226BLASTN svgBLASTP svg
NC_011740:1189455*1189455121259923145Escherichia fergusonii ATCC 35469, complete genome6e-53216BLASTN svgBLASTP svg
NC_014306:43760124376012441784741836Erwinia billingiae Eb661, complete genome9e-46192BLASTN svgBLASTP svg
NC_012917:83372183372187179538075Pectobacterium carotovorum subsp. carotovorum PC1, complete genome3e-45190BLASTN svgBLASTP svg
NC_014306:49013904901390494640145012Erwinia billingiae Eb661, complete genome8e-43182BLASTN svgBLASTP svg
NC_015224:20177812017781204035222572Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-42180BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome5e-41176BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome5e-38167BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome5e-38167BLASTN svgBLASTP svg
NC_014500:84249384249388059638104Dickeya dadantii 3937 chromosome, complete genome5e-38167BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome3e-36161BLASTN svgBLASTP svg
NC_014837:25868702586870261129224423Pantoea sp. At-9b chromosome, complete genome5e-35157BLASTN svgBLASTP svg
NC_020064:3609844*3609844365321743374Serratia marcescens FGI94, complete genome3e-33151BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome2e-31145BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome2e-31145BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome2e-31145BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome2e-31145BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome2e-31145BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome2e-31145BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome2e-31145BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome2e-31145BLASTN svgBLASTP svg
NC_012917:2921932*2921932295050128570Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-31145BLASTN svgBLASTP svg
NC_012917:3684840*3684840370871823879Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-31145BLASTN svgBLASTP svg
NC_020181:51305135130513517631045798Enterobacter aerogenes EA1509E, complete genome2e-31145BLASTN svgBLASTP svg
NC_004547:1970686*1970686199651325828Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-29139BLASTN svgBLASTP svg
NC_020211:103371*10337112946526095Serratia marcescens WW4, complete genome2e-28135BLASTN svgBLASTP svg
NC_020063:1051310*1051310108258031271Enterobacteriaceae bacterium strain FGI 57, complete genome7e-28133BLASTN svgBLASTP svg
NC_014121:13573391357339138312725789Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-28133BLASTN svgBLASTP svg
NC_010468:49074*490746937320300Escherichia coli ATCC 8739, complete genome3e-27131BLASTN svgBLASTP svg
NC_020211:996497*996497103223335737Serratia marcescens WW4, complete genome4e-26127BLASTN svgBLASTP svg
CP002797:24729082472908249359920692Escherichia coli NA114, complete genome7e-25123BLASTN svgBLASTP svg
NC_011083:25428762542876256885525980Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-25123BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-24121BLASTN svgBLASTP svg
NC_012912:37491563749156377027021115Dickeya zeae Ech1591, complete genome4e-23117BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome1e-20109BLASTN svgBLASTP svg
NC_007963:22320002232000225937927380Chromohalobacter salexigens DSM 3043, complete genome6e-19103BLASTN svgBLASTP svg
NC_013592:1730505*1730505176316532661Dickeya dadantii Ech586, complete genome2e-18101BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_009792:36653693665369370602240654Citrobacter koseri ATCC BAA-895, complete genome4e-1797.6BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1591.7BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome2e-1591.7BLASTN svgBLASTP svg
CP002516:1165726*1165726119130025575Escherichia coli KO11, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_013956:44900004490000451370923710Pantoea ananatis LMG 20103 chromosome, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012880:1765920*1765920184383077911Dickeya dadantii Ech703, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_012225:14979341497934152218824255Brachyspira hyodysenteriae WA1, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_012880:37486653748665378917040506Dickeya dadantii Ech703, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_009348:28369692836969285986022892Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_004547:442927*44292748635443428Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_004547:2470978*2470978249481623839Erwinia carotovora subsp. atroseptica SCRI1043, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_003295:34215203421520348536463845Ralstonia solanacearum GMI1000, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004547:18375001837500185898821489Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_004547:3866439*3866439389314026702Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_015061:12519051251905128092529021Rahnella sp. Y9602 chromosome, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_020211:31514583151458317575024293Serratia marcescens WW4, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_020181:51825685182568520953926972Enterobacter aerogenes EA1509E, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015663:770485*77048579596825484Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007347:24219422421942244414322202Ralstonia eutropha JMP134 chromosome 1, complete sequence2e-0661.9BLASTN svgBLASTP svg
NC_009439:31040003104000312885524856Pseudomonas mendocina ymp, complete genome8e-0660BLASTN svgBLASTP svg
NC_003295:998000*998000102093922940Ralstonia solanacearum GMI1000, complete genome8e-0660BLASTN svgBLASTP svg