Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:1970686 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
19696971970689993flagellar motor proteinQuickGO ontologyBLASTP
197068619724101725flagellar M-ring proteinQuickGO ontologyBLASTP
19726711972985315flagellar basal body proteinQuickGO ontologyBLASTP
19732351973615381flagellar proteinQuickGO ontologyBLASTP
19736151974025411flagellar protein FliSQuickGO ontologyBLASTP
197406519754831419flagellar hook-associated proteinQuickGO ontologyBLASTP
19757281976600873flagellinQuickGO ontologyBLASTP
197682419802433420hypothetical proteinBLASTP
198055519816671113nucleotide sugar transaminaseQuickGO ontologyBLASTP
19817731982474702hypothetical proteinBLASTP
19824771983436960hypothetical proteinBLASTP
19834361984404969hypothetical proteinBLASTP
19844041984844441putative acetyltransferaseQuickGO ontologyBLASTP
19848411985590750hypothetical proteinBLASTP
19861181986840723flagellar biosynthesis sigma factor FliAQuickGO ontologyBLASTP
19870441987559516putative alternative sigma factor regulatory proteinQuickGO ontologyBLASTP
19880901988878789phosphate starvation-inducible proteinQuickGO ontologyBLASTP
1989132198922190tRNA-SerQuickGO ontologyBLASTP
19894401990078639hypothetical proteinBLASTP
199029519923282034high-affinity choline transport proteinQuickGO ontologyBLASTP
19926861993273588transcriptional regulator BetIQuickGO ontologyBLASTP
199334219948141473betaine aldehyde dehydrogenaseQuickGO ontologyBLASTP
199483419965131680choline dehydrogenaseQuickGO ontologyBLASTP