Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:3104000 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
310409631055081413two component sigma54 specific Fis family transcriptional regulatorQuickGO ontologyBLASTP
310551231067411230PASPAC sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
310689231083671476sigma-54 dependent trancsriptional regulatorQuickGO ontologyBLASTP
31086273108920294hypothetical proteinBLASTP
31089453109325381flagellar protein FliSQuickGO ontologyBLASTP
31093983109790393flagellar protein FliSQuickGO ontologyBLASTP
310979031112531464flagellar hook-associated 2 domain-containing proteinQuickGO ontologyBLASTP
31113333111725393flagellar protein FlaG proteinQuickGO ontologyBLASTP
311179831132761479flagellin domain-containing proteinQuickGO ontologyBLASTP
311353131188105280glycosyl transferase family proteinQuickGO ontologyBLASTP
31188033119465663nucleotidyl transferaseQuickGO ontologyBLASTP
31194413120046606HAD family hydrolaseQuickGO ontologyBLASTP
31200433120813771methyltransferase type 12QuickGO ontologyBLASTP
312095431226421689flagellar hook-associated protein FlgLQuickGO ontologyBLASTP
312271131247562046flagellar hook-associated protein FlgKQuickGO ontologyBLASTP
312476631259501185peptidoglycan hydrolaseQuickGO ontologyBLASTP
312596531271251161flagellar basal body P-ring proteinQuickGO ontologyBLASTP
31273083128030723flagellar basal body L-ring proteinQuickGO ontologyBLASTP
31280703128855786flagellar basal body rod protein FlgGQuickGO ontologyBLASTP