Pre_GI Gene

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Host: NC_012917 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:2921932 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29219322922519588transcriptional regulator TetR familyQuickGO ontologyBLASTP
292287229249052034cholinecarnitinebetaine transporterQuickGO ontologyBLASTP
29251212925759639Ribosegalactose isomeraseQuickGO ontologyBLASTP
2925977292606690tRNA-SerQuickGO ontologyBLASTP
29261572926945789PhoH family proteinQuickGO ontologyBLASTP
29274772927992516protein FliZQuickGO ontologyBLASTP
29281962928918723RNA polymerase sigma 28 subunit FliAWhiGQuickGO ontologyBLASTP
292927129306921422hypothetical proteinBLASTP
29307372931477741Methyltransferase type 12QuickGO ontologyBLASTP
29314742931926453GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
29319142932882969hypothetical proteinBLASTP
29328822933841960hypothetical proteinBLASTP
29338442934545702WbqC-like family proteinQuickGO ontologyBLASTP
293467229357811110DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
293608229395133432Methyltransferase type 11QuickGO ontologyBLASTP
29397362940602867flagellin domain proteinQuickGO ontologyBLASTP
294087129422951425flagellar hook-associated 2 domain proteinQuickGO ontologyBLASTP
29423222942732411flagellar protein FliSQuickGO ontologyBLASTP
29427322943112381flagellar export chaperoneQuickGO ontologyBLASTP
29433782943692315flagellar hook-basal body complex subunit FliEQuickGO ontologyBLASTP
294395329456771725flagellar M-ring protein FliFQuickGO ontologyBLASTP
29456742946666993flagellar motor switch protein FliGQuickGO ontologyBLASTP
29466592947384726flagellar assembly protein FliHQuickGO ontologyBLASTP
294738429487541371ATPase FliIYscN familyQuickGO ontologyBLASTP
29487632949209447flagellar export protein FliJQuickGO ontologyBLASTP
294920629505011296flagellar hook-length control proteinQuickGO ontologyBLASTP