Pre_GI: BLASTP Hits

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Query: NC_008593:196257:202869 Clostridium novyi NT, complete genome

Start: 202869, End: 203327, Length: 459

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015425:198315:207543207543208001459Clostridium botulinum BKT015925 chromosome, complete genometranscription regulator ctsR2e-52204
NC_014328:4471995:447758344775834478065483Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional repressor3e-35147
NC_010516:3807780:381329438132943813758465Clostridium botulinum B1 str. Okra, complete genometransciptional repressor CtsR2e-35147
NC_010520:3837378:384289238428923843356465Clostridium botulinum A3 str. Loch Maree, complete genometransciptional repressor CtsR2e-35147
NC_012563:4004709:401022240102224010686465Clostridium botulinum A2 str. Kyoto, complete genometransciptional repressor CtsR2e-35147
NC_009495:3735703:374229637422963742760465Clostridium botulinum A str. ATCC 3502 chromosome, complete genometransciptional repressor CtsR2e-35147
NC_009697:3711692:371828537182853718749465Clostridium botulinum A str. ATCC 19397 chromosome, completetransciptional repressor CtsR2e-35147
NC_009698:3609881:361539436153943615858465Clostridium botulinum A str. Hall chromosome, complete genometransciptional repressor CtsR2e-35147
NC_009699:3839575:384508938450893845553465Clostridium botulinum F str. Langeland chromosome, complete genometransciptional repressor CtsR2e-35147
NC_017297:3838189:384370338437033844167465Clostridium botulinum F str. 230613 chromosome, complete genometransciptional repressor CtsR2e-35147
NC_012658:3827500:383301938330193833483465Clostridium botulinum Ba4 str. 657 chromosome, complete genometransciptional repressor CtsR1e-34145
NC_004557:2777291:278374227837422784200459Clostridium tetani E88, complete genometranscriptional regulator ctsR2e-33141
NC_021182:4602683:460947146094714609929459Clostridium pasteurianum BC1, complete genometranscriptional repressor of class III stress genes2e-33140
NC_010723:173280:215468215468215923456Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulator CtsR2e-32137
NC_010674:192951:213673213673214128456Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulator CtsR3e-32137
NC_015687:3326461:333311233331123333573462Clostridium acetobutylicum DSM 1731 chromosome, complete genometransciptional regulator CTSR8e-32135
NC_003030:3324834:333148533314853331946462Clostridium acetobutylicum ATCC 824, complete genomeTransciptional regulator CTSR8e-32135
NC_011837:165913:181307181307181792486Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-31132
NC_009706:165913:181307181307181792486Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator9e-31132
NC_009012:2100000:211548221154822115943462Clostridium thermocellum ATCC 27405, complete genomeFirmicute transcriptional repressor of class III stress genes1e-25115
NC_020134:301500:304168304168304626459Clostridium stercorarium subsp. stercorarium DSM 8532, completetranscriptional regulator CtsR6e-25112
NC_008261:3014373:301492030149203015375456Clostridium perfringens ATCC 13124, complete genometranscriptional repressor5e-24110
NC_003366:2788268:279228127922812792736456Clostridium perfringens str. 13, complete genometranscriptional repressor of class III stress genes5e-24110
NC_013316:1:407064070641170465Clostridium difficile R20291, complete genometranscriptional regulator3e-24110
NC_008262:2649289:265847126584712658926456Clostridium perfringens SM101, complete genometranscriptional repressor5e-24109
NC_019970:336472:346874346874347386513Thermoanaerobacterium thermosaccharolyticum M0795, complete genometranscriptional repressor of class III stress genes5e-24109
NC_015565:173774:191692191692192219528Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completetranscriptional repressor, CtsR5e-23106
NC_007503:2098980:210770621077062108179474Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator CtsR3e-22103
NC_011899:86800:102182102182102655474Halothermothrix orenii H 168, complete genometranscriptional repressor, CtsR1e-21102
NC_004193:79588:109439109439109906468Oceanobacillus iheyensis HTE831, complete genometranscriptional repressor of class III stress genes3e-21100
NC_004461:277291:282683282683283144462Staphylococcus epidermidis ATCC 12228, complete genomectsR protein2e-2098.2
NC_014378:131810:144249144249144734486Acetohalobium arabaticum DSM 5501 chromosome, complete genometranscriptional repressor, CtsR3e-2097.1
NC_002570:126500:132792132792133262471Bacillus halodurans C-125, complete genometranscriptional repressor of class III stress genes3e-2097.1
NC_011999:2023248:202463920246392025112474Macrococcus caseolyticus JCSC5402, complete genometranscriptional regulator CtsR2e-1891.3
NC_014152:241776:260413260413260871459Thermincola sp. JR, complete genometranscriptional repressor, CtsR4e-1890.1
NC_014654:2138794:214546121454612145928468Halanaerobium sp. 'sapolanicus' chromosome, complete genometranscriptional repressor, CtsR4e-1890.1
NC_017208:64500:963459634596806462Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional regulator ctsR5e-1890.1
NC_011567:75306:889368893689397462Anoxybacillus flavithermus WK1, complete genomeTranscriptional repressor of class III stress genes, CtsR7e-1889.4
NC_015975:267994:280758280758281225468Lactobacillus ruminis ATCC 27782 chromosome, complete genometranscriptional regulator1e-1788.6
NC_014219:83888:102499102499102975477Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional repressor, CtsR1e-1788.6
NC_007929:210088:231806231806232273468Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator ctsR2e-1788.2
NC_004668:3156247:316002431600243160491468Enterococcus faecalis V583, complete genometranscriptional regulator CtsR2e-1788.2
NC_016884:256598:274011274011274475465Sulfobacillus acidophilus DSM 10332 chromosome, complete genometranscriptional regulator7e-1785.9
NC_015757:263938:281351281351281815465Sulfobacillus acidophilus TPY chromosome, complete genometranscriptional repressor7e-1785.9
NC_019903:421000:426292426292426762471Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,transcriptional repressor of class III stress genes2e-1684.7
NC_018704:81733:107065107065107526462Amphibacillus xylanus NBRC 15112, complete genometranscriptional regulator CtsR5e-1683.6
NC_010382:4479464:449712544971254497622498Lysinibacillus sphaericus C3-41, complete genometranscriptional regulator5e-1683.6
NC_010556:71776:930049300493459456Exiguobacterium sibiricum 255-15, complete genometranscriptional repressor, CtsR9e-1579.3
NC_012673:1600242:160753316075331608009477Exiguobacterium sp. AT1b, complete genometranscriptional repressor, CtsR1e-1478.6
NC_018665:71677:929409294093395456Exiguobacterium antarcticum B7 chromosome, complete genomeTranscriptional repressor, CtsR4e-1477
NC_015678:1443178:144887114488711449335465Streptococcus parasanguinis ATCC 15912 chromosome, complete genometranscriptional regulator CtsR4e-1373.6
NC_004116:1827351:182735118273511827815465Streptococcus agalactiae 2603V/R, complete genometranscriptional regulator CtsR4e-1270.5
NC_012925:1776450:179294117929411793399459Streptococcus suis P1/7, complete genometranscriptional regulator1e-1168.9
NC_009442:1865244:188173618817361882194459Streptococcus suis 05ZYH33 chromosome, complete genomeCtsR family transcriptional regulator1e-1168.9
NC_009443:1860390:188110918811091881567459Streptococcus suis 98HAH33, complete genometranscriptional regulator CtsR1e-1168.9
NC_012924:1860631:188135018813501881808459Streptococcus suis SC84, complete genometranscriptional regulator1e-1168.9
NC_012926:1910882:193160119316011932059459Streptococcus suis BM407 chromosome, complete genometranscriptional regulator1e-1168.9
NC_009785:2049395:205183120518312052289459Streptococcus gordonii str. Challis substr. CH1, complete genometranscription regulator ctsR3e-1167.4
NC_013199:2536705:254329625432962543763468Lactobacillus rhamnosus Lc 705, complete genometranscriptional regulator CtsR2e-1065.1
NC_008526:2489196:249934724993472499814468Lactobacillus casei ATCC 334, complete genomeTranscriptional repressor of class III stress genes1e-0962