Pre_GI Gene

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Host: NC_009012 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009012:2100000 Clostridium thermocellum ATCC 27405, complete genome

Host Lineage: Clostridium thermocellum; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a well studied producer of endoglucanase and several restriction endonucleases. Thermophilic cellulose degrading bacterium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a thermophilic anaerobe that produces an extracellular enzyme system capable of degrading crystalline cellulose to soluble sugars that are further utilized as the carbon source for growth.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
21000382100997960copper amine oxidase-like proteinQuickGO ontologyBLASTP
21016732102065393hypothetical proteinBLASTP
21021372102670534hypothetical proteinBLASTP
21030342103351318hypothetical protein
21035802103972393ribosomal protein S9QuickGO ontologyBLASTP
21039952104432438ribosomal protein L13QuickGO ontologyBLASTP
21048222105217396hypothetical proteinBLASTP
210532021064021083protein of unknown function DUF147QuickGO ontologyBLASTP
210643321077971365DNA repair protein RadAQuickGO ontologyBLASTP
210779721097311935glycoside hydrolase 15-relatedQuickGO ontologyBLASTP
211004021112961257glycosyl transferase family 2QuickGO ontologyBLASTP
211136421138202457ATPase AAA-2QuickGO ontologyBLASTP
211386621148881023ATPguanido phosphotransferaseQuickGO ontologyBLASTP
21149292115435507UvrBUvrC proteinQuickGO ontologyBLASTP
21154822115943462Firmicute transcriptional repressor of class III stress genesQuickGO ontologyBLASTP
21162672116971705protein of unknown function DUF1624QuickGO ontologyBLASTP
211717021192572088translation elongation factor GQuickGO ontologyBLASTP
211980121208261026phospho-2-dehydro-3-deoxyheptonate aldolaseQuickGO ontologyBLASTP
212081621219131098Prephenate dehydrogenaseQuickGO ontologyBLASTP
2122003212327412723-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP