Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:301500 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3018123038932082elongation factor GQuickGO ontologyBLASTP
304168304626459transcriptional regulator CtsRQuickGO ontologyBLASTP
304712305212501putative UvrBUvrC proteinQuickGO ontologyBLASTP
3052173062571041putative ATPguanido phosphotransferaseQuickGO ontologyBLASTP
3062673086992433chaperone protein ClpBQuickGO ontologyBLASTP
30892330935743550S ribosomal protein L13QuickGO ontologyBLASTP
30937930977139330S ribosomal protein S9QuickGO ontologyBLASTP
309774309899126hypothetical protein
310072310185114hypothetical protein
3102103113461137glycerate kinase GlxKQuickGO ontologyBLASTP
3116183144642847UvrABC system protein AQuickGO ontologyBLASTP
314479314895417hypothetical proteinBLASTP
315240315872633riboflavin transporter RibUQuickGO ontologyBLASTP
315905316402498thioesterase superfamily protein YciAQuickGO ontologyBLASTP
316503316775273hypothetical protein
316790317497708hypothetical protein DUF421QuickGO ontologyBLASTP
317581318129549ribosomal protein N-acetylaseQuickGO ontologyBLASTP
318375319337963glucokinase GlcKQuickGO ontologyBLASTP
319351320151801tRNA pseudouridine synthase AQuickGO ontologyBLASTP
320148320408261hypothetical proteinBLASTP
3212273250093783DNA-directed RNA polymerase subunit betaQuickGO ontologyBLASTP
3250243285633540DNA-directed RNA polymerase subunit betaQuickGO ontologyBLASTP
328599328928330hypothetical proteinBLASTP
329146329868723putative TraX family proteinQuickGO ontologyBLASTP
3300093319701962purine-binding proteinQuickGO ontologyBLASTP
331967332554588hypothetical proteinBLASTP
332638333516879hypothetical proteinBLASTP
3335343348261293hypothetical proteinBLASTP
3351503364211272homoserine dehydrogenase HomQuickGO ontologyBLASTP
3364323382281797ABC transporter transmembrane regionQuickGO ontologyBLASTP