Pre_GI Gene

Some Help

Host: NC_013199 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013199:2536705 Lactobacillus rhamnosus Lc 705, complete genome

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
253670525403073603DNA-directed RNA polymerase subunit beta RNAP subunit beta Transcriptase subunit beta RNA polymerase subunit betaQuickGO ontologyBLASTP
25405252540686162predicted ORFQuickGO ontology
254074925432562508ATP-binding subunit of Clp protease and DnaKDnaJ chaperonesQuickGO ontologyBLASTP
25432962543763468transcriptional regulator CtsRQuickGO ontologyBLASTP
25452652545603339metal-dependent RNase consists of a metallo-beta-lactamase domain and an RNA-binding KH domainQuickGO ontologyBLASTP
25457412546040300lipoproteinQuickGO ontologyBLASTP
25469552547350396hypothetical proteinBLASTP
25477572547969213hypothetical proteinBLASTP
25481912548556366hypothetical proteinBLASTP
25488432549037195hypothetical proteinBLASTP
25490222549339318hypothetical proteinBLASTP
25492932549496204hypothetical proteinBLASTP
25494472549632186hypothetical proteinBLASTP
255034025518361497Lysyl-tRNA synthetase class IIQuickGO ontologyBLASTP
255198725529881002tRNA-dihydrouridine synthase 1QuickGO ontologyBLASTP
25530512553935885chaperonin Heat Shock Protein 33 Homolog Hsp33 Tm1394QuickGO ontologyBLASTP
25539682554129162predicted ORFQuickGO ontologyBLASTP
255425425564042151FtsH-2 peptidase Metallo peptidase MEROPS family M41 ATP-dependent zinc metalloendopeptidase FtsH cell division protein FtsHQuickGO ontologyBLASTP