Pre_GI: BLASTP Hits

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Query: NC_007492:1193626:1193626 Pseudomonas fluorescens PfO-1, complete genome

Start: 1193626, End: 1195014, Length: 1389

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from agricultural loam (sand, clay, and organic matter) soil in 1988 by Compeau et al. and is well adapted to soil environments. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:3050817:3059988305998830636233636Pseudomonas denitrificans ATCC 13867, complete genomeputative two-component system sensor kinase1e-40167
NC_010322:1817598:1859258185925818616482391Pseudomonas putida GB-1 chromosome, complete genomeputative PAS/PAC sensor protein2e-40166
NC_004578:2560473:2581120258112025833752256Pseudomonas syringae pv. tomato str. DC3000, complete genomeextracellular solute-binding protein/sensory box protein9e-36151
NC_009800:2505872:2515779251577925193723594Escherichia coli HS, complete genomesensor histidine kinase/response regulator EvgS2e-25117
NC_010498:2555706:2575404257540425787873384Escherichia coli SMS-3-5, complete genomesensor histidine kinase/response regulator EvgS5e-25116
AP010958:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009 DNA, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA4e-25116
NC_013353:2911741:2935371293537129389643594Escherichia coli O103:H2 str. 12009, complete genomehybrid sensory histidine kinase EvgS in two-component regulatory system with EvgA4e-25116
NC_011663:180889:1964801964802000553576Shewanella baltica OS223 chromosome, complete genomemulti-sensor hybrid histidine kinase4e-25116
NC_011750:2585015:2606176260617626097693594Escherichia coli IAI39 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-25116
NC_011745:2751437:2759117275911727627103594Escherichia coli ED1a chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-25116
NC_011601:2614691:2640787264078726443803594Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA3e-25116
NC_016902:1419413:1433431143343114370243594Escherichia coli KO11FL chromosome, complete genomeHpt sensor hybrid histidine kinase9e-25115
CP002516:1419413:1433431143343114370243594Escherichia coli KO11, complete genomeHpt sensor hybrid histidine kinase9e-25115
CP002185:2659628:2668833266883326724263594Escherichia coli W, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_011741:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
CU928160:2513000:2521244252124425248373594Escherichia coli IAI1 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_009801:2639787:2647883264788326514763594Escherichia coli E24377A, complete genomesensor histidine kinase/response regulator EvgS9e-25115
NC_012967:2409500:2418601241860124221943594Escherichia coli B str. REL606 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_012947:1363724:1374049137404913776423594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_010468:1412791:1423116142311614267093594Escherichia coli ATCC 8739, complete genomeHpt sensor hybrid histidine kinase9e-25115
NC_008258:2473000:2481177248117724847703594Shigella flexneri 5 str. 8401, complete genomeputative sensor for regulator EvgA9e-25115
NC_008563:2610499:2618179261817926217723594Escherichia coli APEC O1, complete genomesensor protein EvgS precursor9e-25115
NC_007946:2625461:2645642264564226492353594Escherichia coli UTI89, complete genomesensor protein EvgS precursor9e-25115
NC_007613:2376974:2386306238630623898993594Shigella boydii Sb227, complete genomeputative sensor for regulator EvgA5e-25115
NC_010658:2529033:2539071253907125426643594Shigella boydii CDC 3083-94, complete genomesensor histidine kinase/response regulator EvgS5e-25115
NC_013941:2928000:2953577295357729571703594Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA7e-25115
NC_013008:3231414:3271498327149832750913594Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA7e-25115
NC_002695:3189425:3212511321251132161043594Escherichia coli O157:H7 str. Sakai, complete genomeputative sensor for regulator EvgA7e-25115
NC_011353:3276734:3316837331683733202203384Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_011751:2768864:2776961277696127805543594Escherichia coli UMN026 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_011415:2732000:2752482275248227560753594Escherichia coli SE11 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
NC_011742:2533500:2541274254127425448673594Escherichia coli S88 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA9e-25115
CP002797:2472908:2486251248625124895713321Escherichia coli NA114, complete genomesensory histidine kinase2e-24114
CU928145:2708500:2716755271675527203483594Escherichia coli 55989 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-24114
NC_011748:2708500:2716755271675527203483594Escherichia coli 55989, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA2e-24114
NC_007384:2587876:2597542259754226011353594Shigella sonnei Ss046, complete genomeputative sensor for regulator EvgA1e-24114
NC_016822:2678691:2688357268835726919503594Shigella sonnei 53G, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA1e-24114
NC_017328:2516000:2525406252540625286723267Shigella flexneri 2002017 chromosome, complete genomeputative Sensor protein1e-24114
NC_008253:2499735:2507809250780925114023594Escherichia coli 536, complete genomesensor protein EvgS precursor1e-24114
NC_004337:2478461:2487437248743724910303594Shigella flexneri 2a str. 301, complete genomeputative sensor for regulator EvgA1e-24114
NC_004741:2456297:2465576246557624691693594Shigella flexneri 2a str. 2457T, complete genomeputative sensor for regulator EvgA1e-24114
NC_004431:2747237:2766762276676227703553594Escherichia coli CFT073, complete genomeSensor protein evgS precursor1e-24114
NC_007606:4182188:4192185419218541957783594Shigella dysenteriae Sd197, complete genomeputative sensor for regulator EvgA1e-24114
NC_005773:866157:9120999120999138321734Pseudomonas syringae pv. phaseolicola 1448A, complete genomeresponse regulator/sensor histidine kinase, putative3e-24113
NC_010515:1618093:1645024164502416486083585Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencePAS/PAC sensor hybrid histidine kinase5e-1996.3
NC_018012:1274500:1293814129381412993365523Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein2e-1894
NC_010515:1678487:1707597170759717113103714Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencemulti-sensor hybrid histidine kinase1e-1584.7
NC_016830:2168523:2188378218837821915783201Pseudomonas fluorescens F113 chromosome, complete genomehybrid sensory histidine kinase in two-component regulatory system with EvgA1e-1481.6
NC_012796:1049034:1061214106121410631031890Desulfovibrio magneticus RS-1, complete genomeputative signaling protein5e-1479.7
NC_020829:3050817:3058078305807830598711794Pseudomonas denitrificans ATCC 13867, complete genomeputative two-component system sensor kinase5e-1479.3
NC_020064:3998715:4066858406685840691102253Serratia marcescens FGI94, complete genomesignal transduction histidine kinase1e-1378.2
NC_012796:1049034:1093541109354110954151875Desulfovibrio magneticus RS-1, complete genomeputative signaling protein5e-1376.3
NC_007520:2391675:2400483240048324047154233Thiomicrospira crunogena XCL-2, complete genomePAS/PAC sensor hybrid histidine kinase2e-1274.3
NC_015224:1914833:1936266193626619399853720Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative virulence sensor protein3e-1273.6
NC_007759:2748000:2769528276952827720112484Syntrophus aciditrophicus SB, complete genomesignal transduction histidine kinase with PAS domain7e-1272.4
NC_016616:760145:7776457776457815653921Dechlorosoma suillum PS chromosome, complete genomePAS domain S-box7e-1272.4
NC_007759:964000:971072971072971956885Syntrophus aciditrophicus SB, complete genomesensory box/GGDEF family protein2e-1170.9
NC_012796:4693500:4693542469354246964812940Desulfovibrio magneticus RS-1, complete genomesensor histidine kinase2e-1067.8
NC_009792:4017510:4039164403916440423463183Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein4e-1066.6
NC_007759:512477:522401522401522895495Syntrophus aciditrophicus SB, complete genomePAS domain protein4e-1066.6
NC_008463:2654014:2661144266114426641222979Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative sensor/response regulator hybrid2e-0964.3
NC_014623:5350116:5368481536848153706552175Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesensor protein2e-0964.3
NC_017192:88940:1061581061581083502193Arcobacter sp. L, complete genometwo-component sensor kinase3e-0963.5
NC_009648:3803622:3838120383812038413623243Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative sensor protein EvgS15e-0963.2
NC_011769:2248902:2272085227208522756603576Desulfovibrio vulgaris str. 'Miyazaki F', complete genomemulti-sensor hybrid histidine kinase4e-0963.2
NC_014507:2568933:2570827257082725736942868Methanoplanus petrolearius DSM 11571 chromosome, complete genomemulti-sensor signal transduction histidine kinase6e-0962.4
NC_014618:1103239:1108693110869311118783186Enterobacter cloacae SCF1 chromosome, complete genomeHpt sensor hybrid histidine kinase1e-0861.6
NC_009483:3173464:3183932318393231867212790Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase1e-0861.2
NC_017098:840492:8552368552368573802145Spirochaeta africana DSM 8902 chromosome, complete genomePAS domain-containing protein3e-0860.5
NC_007606:2353098:2361959236195923643542396Shigella dysenteriae Sd197, complete genome3e-0860.1
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase1e-0758.2
NC_008700:3692333:3711339371133937150493711Shewanella amazonensis SB2B, complete genomesensory box histidine kinase/response regulator2e-0757.4
NC_009439:4404942:4406940440694044106743735Pseudomonas mendocina ymp, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)2e-0757.4
NC_020291:2701149:2708618270861827102461629Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomePAS domain S-box3e-0757.4
NC_017192:276187:2761872761872785562370Arcobacter sp. L, complete genometwo-component sensor kinase4e-0756.6
NC_013216:1748241:1761679176167917647443066Desulfotomaculum acetoxidans DSM 771, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)5e-0756.2
NC_017192:2153461:2174987217498721781573171Arcobacter sp. L, complete genometwo-component sensor kinase2e-0653.9
NC_015061:4286000:4309973430997343123122340Rahnella sp. Y9602 chromosome, complete genomemulti-sensor hybrid histidine kinase3e-0653.5
NC_013446:2237854:2263140226314022656652526Comamonas testosteroni CNB-2, complete genomemulti-sensor signal transduction histidine kinase5e-0652.8
NC_009850:1011293:1026680102668010282541575Arcobacter butzleri RM4018, complete genometwo-component sensor histidine kinase6e-0652.8
NC_012918:1814000:1823304182330418264473144Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase6e-0652.4