Pre_GI: BLASTP Hits

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Query: NC_004603:370320:370320 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 370320, End: 372272, Length: 1953

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013282:116649:1331691331691350881920Cronobacter turicensis, complete genomePTS system mannitol-specific EIICBA component0858
NC_011748:4131924:4144171414417141460841914Escherichia coli 55989, complete genomefused mannitol-specific PTS enzymes: IIA components ; IIB components ; IIC components0852
CU928145:4131924:4144171414417141460841914Escherichia coli 55989 chromosome, complete genomefused mannitol-specific PTS enzymes: IIA components ; IIB components ; IIC components0852
NC_009800:3787320:3798811379881138007241914Escherichia coli HS, complete genomePTS system, mannitol-specific IIABC component0852
NC_011415:4006500:4017340401734040192531914Escherichia coli SE11 chromosome, complete genomePTS system mannitol-specific IIABC components0852
NC_012759:3648500:3658630365863036605431914Escherichia coli BW2952 chromosome, complete genomefused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components0852
NC_012947:126596:1355501355501374631914Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completePTS system, mannitol-specific IIC subunit0852
NC_012967:3696877:3706974370697437088871914Escherichia coli B str. REL606 chromosome, complete genomePTS system mannitol-specific transporter subunit IIABC0852
NC_013416:1748848:1751676175167617535561881Aggregatibacter actinomycetemcomitans D11S-1, complete genomePTS system, mannitol-specific IIC subunit0850
NC_016513:2103958:2105771210577121076511881Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completePTS system mannitol-specific transporter subunit IIC0849
NC_004337:3590323:3738310373831037402231914Shigella flexneri 2a str. 301, complete genomePTS system, mannitol-specific enzyme IIABC components0847
AP010958:4707712:4709542470954247114551914Escherichia coli O103:H2 str. 12009 DNA, complete genomefused mannitol-specific PTS enzymes: IIA component /IIB component/IIC component0847
CP002185:3964500:3975271397527139771841914Escherichia coli W, complete genomefused mannitol-specific PTS enzymes: IIA components/IIB components/IIC components0847
NC_010468:111504:1206321206321225451914Escherichia coli ATCC 8739, complete genomePTS system, mannitol-specific IIC subunit0847
CP002516:119935:1288891288891308021914Escherichia coli KO11, complete genomePTS system, mannitol-specific IIC subunit0847
NC_009801:4073968:4085443408544340873561914Escherichia coli E24377A, complete genomePTS system, mannitol-specific IIABC component0847
NC_013353:4707712:4709542470954247114551914Escherichia coli O103:H2 str. 12009, complete genomefused mannitol-specific PTS enzymes: IIA component /IIB component/IIC component0847
NC_016902:119935:1288891288891308021914Escherichia coli KO11FL chromosome, complete genomePTS system mannitol-specific transporter subunit IIC0847
NC_010498:3988351:4007925400792540098381914Escherichia coli SMS-3-5, complete genomePTS system, mannitol-specific IIABC component0847
NC_015224:4473230:4473230447323044750951866Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,PTS system, mannitol-specific IIABC component0805
NC_009617:263060:2762622762622776681407Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS system mannitol-specific transporter subunit IIC1e-144513
NC_013172:783097:8049728049728070352064Brachybacterium faecium DSM 4810, complete genomephosphotransferase system, mannitol-specific IIBC component1e-137491
NC_020207:1346579:1348175134817513496201446Enterococcus faecium NRRL B-2354, complete genomePTS system, mannitol-specific cryptic IIB, IIC component1e-136487
NC_020995:2636519:2645125264512526470441920Enterococcus casseliflavus EC20, complete genomehypothetical protein2e-131470
NC_002951:2208813:2208813220881322103511539Staphylococcus aureus subsp. aureus COL, complete genomePTS system, mannitol-specific IIBC components5e-130465
NC_017341:2303005:2303005230300523045431539Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,PTS system mannitol-specific IIBC component5e-130465
NC_009004:25988:2649426494283171824Lactococcus lactis subsp. cremoris MG1363, complete genomePTS system, mannitol-specific IIBC component4e-127455
NC_003210:2879906:2884141288414128855471407Listeria monocytogenes EGD-e, complete genomehypothetical protein3e-124446
NC_015389:616430:6663496663496678241476Coriobacterium glomerans PW2 chromosome, complete genomePTS system D-mannitol-specific IIBC components, Fru family7e-124444
NC_014448:225414:2264922264922279391448Mycoplasma hyorhinis HUB-1 chromosome, complete genome5e-78292
NC_013316:2585666:260693926069392607361423Clostridium difficile R20291, complete genomePTS system, mannitol-specific IIa component4e-26120
NC_013315:2505792:252638325263832526805423Clostridium difficile CD196 chromosome, complete genomePTS system mannitol-specific transporter subunit IIA4e-26120
NC_017179:2513804:253439525343952534817423Clostridium difficile BI1, complete genomePTS system mannitol-specific transporter subunit IIA4e-26120
NC_016513:317197:3400363400363415651530Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completebifunctional PTS system fructose-specific transporter subunit IIA/HPr protein1e-25118
NC_006155:1567306:1583090158309015842231134Yersinia pseudotuberculosis IP 32953, complete genomePTS system, fructose-specific II component / phosphocarrier p...3e-24114
NC_003143:1441211:1456994145699414581271134Yersinia pestis CO92, complete genomehypothetical protein3e-24114
NC_010159:1558000:1573109157310915742421134Yersinia pestis Angola, complete genomephosphocarrier, HPr family3e-24114
NC_008149:3022970:3025620302562030267531134Yersinia pestis Nepal516, complete genomehypothetical protein3e-24114
NC_010634:1565788:1581587158158715827201134Yersinia pseudotuberculosis PB1/+, complete genomeHPr family phosphocarrier protein3e-24114
NC_005810:1413305:1415955141595514170881134Yersinia pestis biovar Microtus str. 91001, complete genomebifunctional fructose-specific PTS IIA/HPr protein3e-24114
NC_009708:3035798:3038448303844830395811134Yersinia pseudotuberculosis IP 31758 chromosome, complete genomebifunctional PTS system fructose-specific transporter subunit IIA/HPr protein3e-24114
NC_008150:1147883:1163094116309411642271134Yersinia pestis Antiqua, complete genomehypothetical protein3e-24114
NC_004088:3186954:3189604318960431907371134Yersinia pestis KIM, complete genomePTS system, fructose-specific IIA/fpr component3e-24114
NC_010465:3046904:3049554304955430506871134Yersinia pseudotuberculosis YPIII, complete genomephosphocarrier, HPr family3e-24114
NC_017265:2807302:2809952280995228110851134Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,IIA and HPr components of fructose-specific PTS enzyme3e-24114
NC_017168:4363000:4379062437906243801951134Yersinia pestis A1122 chromosome, complete genomebifunctional PTS system fructose-specific transporter subunit IIA/HPr protein3e-24114
NC_017160:1299733:1302191130219113033241134Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-24114
NC_017154:1454704:1470488147048814716211134Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-24114
NC_014029:1512605:1528380152838015295131134Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-24114
NC_009381:2731965:2734615273461527357481134Yersinia pestis Pestoides F chromosome, complete genomebifunctional PTS system fructose-specific transporter subunit IIA/HPr protein3e-24114
NC_014121:3553809:3554507355450735556371131Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completebifunctional fructose-specific PTS IIA/HPr protein4e-24113
NC_012121:1676367:167840716784071678841435Staphylococcus carnosus subsp. carnosus TM300, complete genomePTS system, mannitol-specific IIA component1e-21105
NC_002662:30922:329073290733338432Lactococcus lactis subsp. lactis Il1403, complete genomemannitol-specific PTS system IIA component4e-21103
NC_012526:2483000:2505755250575525082382484Deinococcus deserti VCD115, complete genomeputative phosphoenolpyruvate-protein phosphotransferase4e-21103
NC_009004:25988:303583035830789432Lactococcus lactis subsp. cremoris MG1363, complete genomePTS system, mannitol-specific IIA component8e-21102
NC_009617:263060:280258280258280698441Clostridium beijerinckii NCIMB 8052 chromosome, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 27e-1996.3
NC_017341:2303005:230672223067222307156435Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2, MtlA_13e-1894
NC_002951:2208813:221253022125302212964435Staphylococcus aureus subsp. aureus COL, complete genomePTS system, mannitol-specific IIA component3e-1894
NC_005955:173436:1734361734361759492514Bartonella quintana str. Toulouse, complete genomeMultiphosphoryl transfer protein (mtp)9e-1892.4
NC_020829:1068438:1091157109115710940362880Pseudomonas denitrificans ATCC 13867, complete genomemulitfunctional PTS system fructose-like transporter subunit IIA/phosphocarrier protein HPr/phosphoenolpyruvate-protein phosphotransferase6e-1479.7
NC_015224:1914833:192682219268221927253432Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,phosphoenolpyruvate-dependent sugar phosphotransferase system, IIA component4e-1377
NC_014306:1286248:130376113037611304192432Erwinia billingiae Eb661, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system, IIa component1e-1275.5
NC_015425:641000:647072647072647518447Clostridium botulinum BKT015925 chromosome, complete genomephosphotransferase system mannitol/fructose-specific IIA domain6e-1169.7
NC_011660:2175537:219569621956962196160465Listeria monocytogenes HCC23 chromosome, complete genomeiiabc fructose/xylitol-pts1e-1068.6
NC_014915:2092678:212720021272002127643444Geobacillus sp. Y412MC52 chromosome, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN2e-1067.8
NC_013411:2975364:298726929872692987712444Geobacillus sp. Y412MC61, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN2e-1067.8
NC_013515:347671:372227372227372685459Streptobacillus moniliformis DSM 12112, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN3e-1067.4
NC_007644:3229:145621456215026465Moorella thermoacetica ATCC 39073, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN2e-0964.7
NC_004431:279868:307515307515307958444Escherichia coli CFT073, complete genomePTS system, mannitol (Cryptic)-specific IIA component7e-0962.8
NC_014328:2872721:288955228895522889989438Clostridium ljungdahlii ATCC 49587 chromosome, complete genomePTS system fructose/mannose-specific transporter subunit IIA1e-0862.4
NC_003030:249648:264282264282264725444Clostridium acetobutylicum ATCC 824, complete genomePTS system, IIA component2e-0862
NC_015687:250768:264280264280264723444Clostridium acetobutylicum DSM 1731 chromosome, complete genomePTS system, IIA component2e-0862
NC_003210:2721559:272315927231592723593435Listeria monocytogenes EGD-e, complete genomehypothetical protein2e-0861.6
NC_003909:3483244:3494145349414534960011857Bacillus cereus ATCC 10987, complete genomePTS system, fructose-specific IIABC component5e-0860.1
NC_011083:3171171:318477431847743185232459Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,pts system mannitol-specific eiicba component7e-0859.7
NC_014334:369974:3699743699743720702097Lactobacillus casei str. Zhang chromosome, complete genometranscriptional antiterminator and PtS system component IIA8e-0859.7
NC_014831:786011:789056789056789196141Thermaerobacter marianensis DSM 12885 chromosome, complete genome9e-0859.3
NC_014831:2201246:221412422141242214591468Thermaerobacter marianensis DSM 12885 chromosome, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN1e-0758.9
NC_014377:532816:5535915535915554221832Thermosediminibacter oceani DSM 16646 chromosome, complete genome1e-0758.9
NC_011773:3547507:3558350355835035602061857Bacillus cereus AH820 chromosome, complete genomePTS system fructose-specific transporter subunit IIABC2e-0758.2
NC_012581:709234:7175947175947194741881Bacillus anthracis str. CDC 684 chromosome, complete genomePTS system fructose-specific transporter subunit IIABC2e-0758.2
NC_009617:648000:651641651641652087447Clostridium beijerinckii NCIMB 8052 chromosome, complete genomePTS transporter subunit IIA-like nitrogen-regulatory protein PtsN2e-0758.2
NC_005362:1796696:1806355180635518083401986Lactobacillus johnsonii NCC 533, complete genomephosphoenolpyruvate-dependent sugar phosphotransferase system EIIABC, probable fructose specific3e-0757.8
NC_014335:3461115:3471548347154834732601713Bacillus cereus biovar anthracis str. CI chromosome, completePTS fructose-specific enzyme IIBC component3e-0757.8
NC_014376:2766326:2772039277203927740752037Clostridium saccharolyticum WM1 chromosome, complete genometranscriptional antiterminator, BglG3e-0757.8
NC_013316:2585666:259997025999702600428459Clostridium difficile R20291, complete genomePTS system, galactitol-specific IIa component2e-0757.8
NC_013315:2505792:251941425194142519872459Clostridium difficile CD196 chromosome, complete genomePTS system galactitol-specific transporter subunit IIA2e-0757.8
NC_017179:2513804:252742625274262527884459Clostridium difficile BI1, complete genomePTS system galactitol-specific transporter subunit IIA2e-0757.8
NC_015214:1853106:1874088187408818760912004Lactobacillus acidophilus 30SC chromosome, complete genomePTS system, fructose-specific enzyme II6e-0756.6
NC_013517:1529765:154133815413381541787450Sebaldella termitidis ATCC 33386, complete genomeputative PTS IIA-like nitrogen-regulatory protein PtsN6e-0756.6
NC_016779:4969626:4981803498180349837551953Bacillus cereus F837/76 chromosome, complete genomePTS system mannose-specific transporter subunit IIB1e-0655.8
NC_016894:377446:3791203791203810301911Acetobacterium woodii DSM 1030 chromosome, complete genomefructose-specific PTS system II components ABC9e-0755.8
NC_013199:392450:4054264054264073691944Lactobacillus rhamnosus Lc 705, complete genomePTS system, fructose-specific IIABC component (fruA-2)1e-0655.5
NC_013364:5083949:511124851112485111712465Escherichia coli O111:H- str. 11128, complete genomePTS system L-ascorbate-specific transporter subunit IIA UlaC1e-0655.5
NC_006510:2044347:2064172206417220662262055Geobacillus kaustophilus HTA426, complete genomehypothetical protein2e-0654.7
NC_010602:2911823:292977629297762930237462Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'PTS system, IIA component3e-0654.3
NC_010842:2919108:293816229381622938623462Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' chromosomeProtein-N(pi)-phosphohistidine-sugar phosphotransferase, subunit A3e-0654.3
NC_012781:4065:1960719607215351929Eubacterium rectale ATCC 33656, complete genomePTS system, fructose-specific, IIABC component3e-0654.3
NC_008600:5005345:5017535501753550195021968Bacillus thuringiensis str. Al Hakam, complete genomephosphotransferase system (PTS) mannose-specific enzyme IIBCA4e-0653.9
NC_016012:665171:683378683378683806429Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeascorbate-specific phosphotransferase enzyme IIA component4e-0653.9
NC_012472:5015621:5027811502781150297631953Bacillus cereus 03BB102, complete genomephosphotransferase system4e-0653.5
NC_011969:4945441:4958931495893149608831953Bacillus cereus Q1 chromosome, complete genomepts mannose-specific enzyme iibca component5e-0653.5
NC_014228:2812000:283020828302082830651444Xenorhabdus nematophila ATCC 19061, complete genomeputative phosphotransferase enzyme II, A component SgcA6e-0653.1
NC_013508:3188978:319213131921313192574444Edwardsiella tarda EIB202, complete genomeputative phosphotransferase enzyme II, A component SgcA7e-0653.1