Pre_GI: BLASTP Hits

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Query: NC_004432:1310322:1333337 Mycoplasma penetrans HF-2, complete genome

Start: 1333337, End: 1333993, Length: 657

Host Lineage: Mycoplasma penetrans; Mycoplasma; Mycoplasmataceae; Mycoplasmatales; Tenericutes; Bacteria

General Information: This strain has been isolated from the tracheal aspirate of a previously healthy HIV-negative patient with severe respiratory symptoms caused by this infection. Causes urogenital and respiratory disease. This genus currently comprises more than 120 obligate parasitic species found in a wide spectrum of hosts, including humans, animals, insects and plants. The primary habitats of human and animal mycoplasmas are mucous membranes of the respiratory and urogenital tracts, eyes, mammary glands and the joints. Infection that proceeds through attachment of the bacteria to the host cell via specialized surface proteins, adhesins, and subsequent invasion, results in prolonged intracellular persistence that may cause lethality. Once detected in association with their eukaryotic host tissue, most mycoplasmas can be cultivated in the absence of a host if their extremely fastidious growth requirements are met. The latter is one of the major traits that puts them in the separate taxonomic group of microorganisms, class Mollicutes. The cell membrane is rich in protein components (up to two thirds of the membrane mass) that largely consists of highly structurally adaptive lipoproteins employed in invading the host immune system, attachment to the host cells, and pathogenic invasion. Cell division proceeds via normal binary fission or via elongation of a parental cell to form multinucleated filaments and the subsequent breakup to form coccoid bodies.Mycoplasmas carry the smallest genomes of self-replicating cells (less than 500 recognizable coding regions), which is one of the reasons they were among the first microorganisms selected for the genome-sequencing projects. During their evolution, mycoplasmas appear to have lost all of the genes involved in amino acid and cofactor biosynthesis, synthesis of the cell wall and lipid metabolism, resulting in a requirement for the full spectrum of substrates and cofactors taken up from the host or from the complex artificial culture medium. They have lost a number of genes involved in cellular processes, such as cell division, heat shock response, regulatory genes, the two-component signal transduction systems, histidine protein kinases or their target response regulators, and most transcription factors. The majority of mycoplasmas are deficient in genes coding for components of intermediary and energy metabolism and thus are dependent mostly on glycolysis as an ATP-generating pathway. This organism infects humans in the urogenital and respiratory tracts though invasion of tissues. The disease is mainly associated with HIV-1 infection, particularly in the homosexual population, and is very persistent and believed to contribute to the deterioration of the immune system during HIV. Mycoplasma penetrans infection has also been suggested to be a primary cause of some forms of human urethritis and respiratory disease in non-HIV individuals.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019949:956791:966414966414967013600Mycoplasma cynos C142 complete genomeRibonuclease HII2e-32138
NC_017208:3816753:385386838538683854641774Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeribonuclease HII9e-30130
NC_014836:2325559:234480823448082345413606Desulfurispirillum indicum S5 chromosome, complete genomeribonuclease H9e-30130
NC_014171:3726054:373773537377353738508774Bacillus thuringiensis BMB171 chromosome, complete genomeribonuclease HII4e-29127
NC_017243:2778427:279598827959882796668681Brachyspira intermedia PWS/A chromosome, complete genomeribonuclease HII3e-28125
NC_017030:6878319:690000469000046900882879Corallococcus coralloides DSM 2259 chromosome, complete genomeribonuclease HII3e-27122
NC_015966:2841420:286183828618382862434597Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeribonuclease H2e-27122
NC_013216:1219775:122327412232741224080807Desulfotomaculum acetoxidans DSM 771, complete genomeRibonuclease H5e-27120
NC_009848:1542978:155788315578831558647765Bacillus pumilus SAFR-032, complete genomeribonuclease HII5e-27120
NC_020134:2237421:224799922479992248769771Clostridium stercorarium subsp. stercorarium DSM 8532, completeribonuclease HII2e-26119
NC_011297:1357947:135981013598101360421612Dictyoglomus thermophilum H-6-12, complete genomeribonuclease HII1e-26119
NC_014329:1407880:144037114403711441093723Corynebacterium pseudotuberculosis FRC41 chromosome, completeribonuclease HII1e-26119
NC_017300:1426975:143772914377291438451723Corynebacterium pseudotuberculosis 1002 chromosome, completeRibonuclease HII1e-26119
NC_017301:1425293:144011714401171440839723Corynebacterium pseudotuberculosis C231 chromosome, completeRibonuclease HII1e-26119
NC_019771:2816732:281890928189092819586678Anabaena cylindrica PCC 7122, complete genomeRNase HII1e-26119
NC_007760:308500:324321324321325172852Anaeromyxobacter dehalogenans 2CP-C, complete genomeribonuclease H4e-26117
NC_011145:306623:326887326887327738852Anaeromyxobacter sp. K, complete genomeRibonuclease H6e-26117
NC_011891:315182:335393335393336244852Anaeromyxobacter dehalogenans 2CP-1, complete genomeRibonuclease H7e-26117
NC_016826:929259:932956932956933735780Streptococcus infantarius subsp. infantarius CJ18 chromosome,ribonuclease HII1e-25116
UCMB5137:1159520:117677111767711177538768Bacillus atrophaeus UCMB-5137ribonuclease HII9e-26116
NC_016024:1974715:199796319979631998595633Candidatus Chloracidobacterium thermophilum B chromosome chromosomeRNase HII2e-25115
NC_004461:921364:921364921364922134771Staphylococcus epidermidis ATCC 12228, complete genomeRNase HII4e-25114
NC_014248:685656:703684703684704349666Nostoc azollae 0708 chromosome, complete genomeribonuclease H6e-25114
NC_003272:5184000:518637551863755187052678Nostoc sp. PCC 7120, complete genomeribonuclease HII1e-24113
NC_011661:1542335:154419815441981544809612Dictyoglomus turgidum DSM 6724, complete genomeRibonuclease H1e-24113
NC_013199:1407742:142265514226551423413759Lactobacillus rhamnosus Lc 705, complete genomeRibonuclease HII (RNase HII)1e-24113
NC_000918:1353310:137452113745211375111591Aquifex aeolicus VF5, complete genomeRNase HII9e-25113
NC_014483:1973233:198511019851101985757648Paenibacillus polymyxa E681 chromosome, complete genomeRibonuclease HII (RNase HII)9e-25113
NC_007413:1570000:157282115728211573498678Anabaena variabilis ATCC 29413, complete genomeRibonuclease HII/HIII8e-25113
NC_003909:3606177:362915736291573629930774Bacillus cereus ATCC 10987, complete genomeribonuclease HII2e-24112
NC_011969:3575988:358576435857643586537774Bacillus cereus Q1 chromosome, complete genomeribonuclease hii2e-24112
NC_007530:3616828:365388636538863654659774Bacillus anthracis str. 'Ames Ancestor', complete genomeribonuclease HII2e-24112
NC_005945:3636321:365445436544543655227774Bacillus anthracis str. Sterne, complete genomeribonuclease HII2e-24112
NC_003997:3617000:365375936537593654532774Bacillus anthracis str. Ames, complete genomeribonuclease HII2e-24112
NC_012581:559182:584028584028584801774Bacillus anthracis str. CDC 684 chromosome, complete genomeribonuclease HII2e-24112
NC_012659:3617000:365378636537863654559774Bacillus anthracis str. A0248, complete genomeribonuclease HII2e-24112
NC_005957:3665657:367543236754323676205774Bacillus thuringiensis serovar konkukian str. 97-27, completeribonuclease HII2e-24112
NC_014335:3589726:360461336046133605386774Bacillus cereus biovar anthracis str. CI chromosome, completeribonuclease HII2e-24112
NC_015160:3749636:374963637496363750235600Odoribacter splanchnicus DSM 20712 chromosome, complete genomeRibonuclease H2e-24112
NC_011658:3603009:364180436418043642577774Bacillus cereus AH187 chromosome, complete genomeribonuclease HII3e-24111
NC_010382:1607013:162535616253561626117762Lysinibacillus sphaericus C3-41, complete genomeribonuclease HII8e-24110
NC_016932:1414226:142497514249751425697723Corynebacterium pseudotuberculosis 316 chromosome, complete genomeribonuclease HII7e-24110
NC_014472:2275254:227939422793942279990597Flavobacteriales bacterium HTCC2170 chromosome, complete genomeribonuclease HII2e-23109
NC_015844:1100664:111782211178221118427606Zobellia galactanivorans, complete genomeribonuclease HII2e-23108
NC_002935:1534889:153849115384911539180690Corynebacterium diphtheriae NCTC 13129, complete genomeribonuclease HII2e-23108
NC_014926:1483974:150502115050211505749729Thermovibrio ammonificans HB-1 chromosome, complete genomeRibonuclease H3e-23108
NC_016633:541559:548670548670549299630Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeribonuclease HII3e-23108
NC_011772:3821917:382419338241933824966774Bacillus cereus G9842, complete genomeribonuclease HII4e-23108
NC_015164:2305415:230634223063422306944603Bacteroides salanitronis DSM 18170 chromosome, complete genomeRibonuclease H9e-23106
NC_004663:4373902:439585143958514396453603Bacteroides thetaiotaomicron VPI-5482, complete genomeribonuclease HII3e-22105
NC_014934:869715:894068894068894664597Cellulophaga algicola DSM 14237 chromosome, complete genomeribonuclease h4e-22104
NC_012471:1197534:120085812008581201631774Streptococcus equi subsp. equi 4047, complete genomeribonuclease HII4e-22104
NC_009662:222964:224216224216224764549Nitratiruptor sp. SB155-2, complete genomeribonuclease HII5e-22104
NC_015638:1885041:188828818882881888887600Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeribonuclease H6e-22103
NC_015846:445000:457566457566458159594Capnocytophaga canimorsus Cc5 chromosome, complete genomeribonuclease HII7e-22103
NC_015496:1857900:186118618611861861824639Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRibonuclease H1e-21103
NC_016787:1509831:151838415183841519073690Corynebacterium diphtheriae HC03 chromosome, complete genomeribonuclease HII3e-21102
NC_016788:1509943:152184915218491522538690Corynebacterium diphtheriae HC04 chromosome, complete genomeribonuclease HII3e-21102
NC_015381:2859000:292778029277802928433654Burkholderia gladioli BSR3 chromosome 1, complete sequenceRibonuclease HII2e-21102
NC_016790:1480441:149434414943441495033690Corynebacterium diphtheriae VA01 chromosome, complete genomeribonuclease HII3e-21101
NC_016786:1519481:152708215270821527771690Corynebacterium diphtheriae HC01 chromosome, complete genomeribonuclease HII3e-21101
NC_016782:1520324:152681715268171527506690Corynebacterium diphtheriae 241 chromosome, complete genomeribonuclease HII3e-21101
NC_014328:1379437:139319713931971394054858Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative ribonuclease HII3e-21101
NC_020291:1437431:145086714508671451679813Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeribonuclease HII4e-21101
NC_011059:1:199591995920579621Prosthecochloris aestuarii DSM 271, complete genomeRibonuclease H1e-2099.8
NC_018515:3865522:388024138802413881023783Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeribonuclease HII3e-2098.6
NC_010520:2635750:263802726380272638836810Clostridium botulinum A3 str. Loch Maree, complete genomeribonuclease HII4e-2098.2
NC_016584:4860360:487549548754954876277783Desulfosporosinus orientis DSM 765 chromosome, complete genomeribonuclease HII5e-2097.8
NC_015422:3581848:359769235976923598312621Alicycliphilus denitrificans K601 chromosome, complete genomeribonuclease H8e-2097.1
NC_014624:2668157:266854926685492669337789Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-1996.7
NC_009495:2571732:257501025750102575819810Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeribonuclease HII4e-1994.7
NC_017192:2153461:215346121534612154033573Arcobacter sp. L, complete genomeribonuclease HII2e-1892.4
NC_005295:272708:300081300081300719639Ehrlichia ruminantium str. Welgevonden, complete genomeribonuclease HII2e-1892
NC_006831:250074:276941276941277603663Ehrlichia ruminantium str. Gardel, complete genomeRibonuclease HII2e-1892
NC_006832:252952:280074280074280736663Ehrlichia ruminantium str. Welgevonden, complete genomeRibonuclease HII2e-1892
NC_009663:2363841:236625023662502366816567Sulfurovum sp. NBC37-1, complete genomeribonuclease HII4e-1891.7
NC_006142:243899:243899243899244480582Rickettsia typhi str. Wilmington, complete genomeribonuclease HII5e-1891.3
NC_017062:244330:244330244330244911582Rickettsia typhi str. B9991CWPP chromosome, complete genomeribonuclease HII5e-1891.3
NC_017066:243913:243913243913244494582Rickettsia typhi str. TH1527 chromosome, complete genomeribonuclease HII5e-1891.3
NC_014752:131994:150217150217150855639Neisseria lactamica ST-640, complete genomeribonuclease HII1e-1789.7
NC_015577:2203835:222375222237522224327576Treponema azotonutricium ZAS-9 chromosome, complete genomeribonuclease HII9e-1787
NC_007799:968499:968499968499969128630Ehrlichia chaffeensis str. Arkansas, complete genomeribonuclease HII2e-1685.9
NC_007109:1105251:112296211229621123543582Rickettsia felis URRWXCal2, complete genomeribonuclease HII5e-1684.7
NC_014644:1456689:148495714849571485640684Gardnerella vaginalis ATCC 14019 chromosome, complete genomeribonuclease HII9e-1683.6
NC_008816:1416711:144986614498661450483618Prochlorococcus marinus str. AS9601, complete genomeRibonuclease HII and HIII1e-1583.2
NC_009840:1485383:151964815196481520265618Prochlorococcus marinus str. MIT 9215, complete genomeRibonuclease HII and HIII2e-1582.8
NC_008817:1476473:147977014797701480399630Prochlorococcus marinus str. MIT 9515, complete genomeRibonuclease HII and HIII2e-1582.4
NC_009802:1886000:190289419028941903448555Campylobacter concisus 13826, complete genomeribonuclease HII3e-1581.6
NC_003103:266013:268353268353268934582Rickettsia conorii str. Malish 7, complete genomeribonuclease HII4e-1581.6
NC_002967:1589069:159126415912641591860597Treponema denticola ATCC 35405, complete genomeribonuclease HII8e-1580.5
NC_014654:1529500:153231515323151533112798Halanaerobium sp. 'sapolanicus' chromosome, complete genomeRibonuclease H3e-1375.1
NC_009091:1423677:142696614269661427583618Prochlorococcus marinus str. MIT 9301, complete genomeRibonuclease HII and HIII4e-1375.1
NC_013949:1163456:118097911809791181710732Helicobacter mustelae 12198 chromosome, complete genomeribonuclease HII4e-1374.7
NC_000921:1343701:136104413610441361673630Helicobacter pylori J99, complete genomeRIBONUCLEASE HII2e-1272.8
NC_014560:1309470:132667113266711327285615Helicobacter pylori SJM180 chromosome, complete genomeribonuclease HII6e-1270.9
NC_017368:1300000:131619513161951316809615Helicobacter pylori F16, complete genomeribonuclease HII1e-1169.7
NC_017371:1358000:137433113743311374936606Helicobacter pylori Gambia94/24 chromosome, complete genomeribonuclease HII2e-1169.7
NC_011498:1345623:136275713627571363371615Helicobacter pylori P12, complete genomeribonuclease hII4e-1168.2
NC_017361:1303553:132086413208641321478615Helicobacter pylori SouthAfrica7 chromosome, complete genomeribonuclease HII6e-1167.8
NC_008229:118000:121877121877122458582Helicobacter acinonychis str. Sheeba, complete genomehypothetical protein5e-1167.8
NC_017375:1317398:133440213344021335016615Helicobacter pylori 83 chromosome, complete genomeribonuclease HII5e-1167.8
NC_017367:1333811:135085313508531351467615Helicobacter pylori F57, complete genomeribonuclease HII5e-1167.8
NC_012039:53497:697776977770328552Campylobacter lari RM2100, complete genomeribonuclease HII7e-1167.4
NC_017358:1342000:135799313579931358607615Helicobacter pylori Cuz20 chromosome, complete genomeribonuclease HII8e-1167.4
NC_017365:77150:806418064181255615Helicobacter pylori F30, complete genomeribonuclease HII2e-1065.9
NC_017063:1362000:137820513782051378819615Helicobacter pylori ELS37 chromosome, complete genomeribonuclease HII3e-1065.1
NC_017372:1373766:139074313907431391357615Helicobacter pylori India7 chromosome, complete genomeribonuclease HII8e-0960.5
NC_017376:1324000:134039213403921341006615Helicobacter pylori SNT49 chromosome, complete genomeribonuclease HII1e-0860.1
NC_013849:1396051:141049714104971411132636Ferroglobus placidus DSM 10642 chromosome, complete genomeribonuclease HII2e-0859.7
NC_014643:1986440:199734719973471998141795Rothia dentocariosa ATCC 17931 chromosome, complete genomeribonuclease HII2e-0859.3
NC_009135:168500:171898171898172617720Methanococcus maripaludis C5, complete genomeribonuclease HII1e-0757
NC_009637:602079:624020624020624739720Methanococcus maripaludis C7 chromosome, complete genomeribonuclease HII3e-0755.5
NC_009975:1203372:120569712056971206416720Methanococcus maripaludis C6, complete genomeribonuclease HII2e-0652.8