Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2237421 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
223488722374242538glycoside hydrolase family 2 sugar binding proteinQuickGO ontologyBLASTP
22374212238056636thiamine pyrophosphokinase ThiNQuickGO ontologyBLASTP
22380532238751699ribulose-phosphate 3-epimerase RpeQuickGO ontologyBLASTP
22387322239616885putative ribosome biogenesis GTPase RsgAQuickGO ontologyBLASTP
223963522416412007serinethreonine-protein kinase Sps1QuickGO ontologyBLASTP
22416742242408735serinethreonine phosphatase StpQuickGO ontologyBLASTP
224241122434571047ribosomal RNA large subunit methyltransferase NQuickGO ontologyBLASTP
224346222448111350ribosomal RNA small subunit methyltransferase BQuickGO ontologyBLASTP
22448652245797933M19 familiy membrane dipeptidaseQuickGO ontologyBLASTP
2245821224591696hypothetical protein
22461962246513318flagellar protein FhlB-like proteinQuickGO ontologyBLASTP
224651822480441527hypothetical proteinBLASTP
22479992248769771ribonuclease HIIQuickGO ontologyBLASTP
22487262249631906ribosome biogenesis GTPase AQuickGO ontologyBLASTP
2249732225008235150S ribosomal protein L19QuickGO ontologyBLASTP
225044522516411197hypothetical proteinBLASTP
22519402252131192hypothetical protein
22522432252611369hypothetical protein
22526852253107423putative holliday junction resolvaseQuickGO ontologyBLASTP
22531722254812164123-bisphosphoglycerate-independent phosphoglycerate mutase GpmIQuickGO ontologyBLASTP
22548872255636750triosephosphate isomerase TpiAQuickGO ontologyBLASTP
225563322568351203phosphoglycerate kinase PgkQuickGO ontologyBLASTP