Pre_GI: OUP Neighbours

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Query: NC_010102:283364 Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,

D: 33.8947

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (SGSC 4150; ATCC BAA-1250) was isolated from a stool sample of an infected woman in Penang, Malaysia, May 16, 2002. This strain is susceptible to antibiotics, and was classified as serovar Paratyphi B because it was unable to metabolize D-tartrate. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 64




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_010468:1343228Escherichia coli ATCC 8739, complete genome76.1121 %Subject ←→ Query29.0512
NC_012912:4737703Dickeya zeae Ech1591, complete genome76.2561 %Subject ←→ Query29.5142
NC_015968:204969*Enterobacter asburiae LF7a chromosome, complete genome76.4951 %Subject ←→ Query30.2205
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.1274 %Subject ←→ Query30.6937
NC_015968:4389871Enterobacter asburiae LF7a chromosome, complete genome77.4755 %Subject ←→ Query30.7332
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete78.174 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome77.3468 %Subject ←→ Query30.8062
NC_015566:4205854*Serratia sp. AS12 chromosome, complete genome77.886 %Subject ←→ Query30.8457
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.174 %Subject ←→ Query31.0494
NC_012912:2800884*Dickeya zeae Ech1591, complete genome76.6299 %Subject ←→ Query31.095
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.7494 %Subject ←→ Query31.1345
NC_011149:3895921Salmonella enterica subsp. enterica serovar Agona str. SL483,75.7966 %Subject ←→ Query31.5601
NC_010067:171053Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.9577 %Subject ←→ Query31.5722
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome76.3051 %Subject ←→ Query31.6444
NC_004631:283289*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete91.0907 %Subject ←→ Query31.6756
NC_013282:3719500*Cronobacter turicensis, complete genome77.8248 %Subject ←→ Query31.6817
NC_009832:4136878*Serratia proteamaculans 568, complete genome76.7862 %Subject ←→ Query31.9857
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,79.0962 %Subject ←→ Query32.0373
NC_004631:3841975Salmonella enterica subsp. enterica serovar Typhi Ty2, complete76.2408 %Subject ←→ Query32.0647
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.1581 %Subject ←→ Query32.0708
NC_003197:3971905Salmonella typhimurium LT2, complete genome76.1979 %Subject ←→ Query32.0829
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome75.0123 %Subject ←→ Query32.164
NC_011083:3985618Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,76.0233 %Subject ←→ Query32.4599
NC_003198:3855157Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.7843 %Subject ←→ Query32.5632
NC_014306:2476316Erwinia billingiae Eb661, complete genome75.1379 %Subject ←→ Query32.9311
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome78.1893 %Subject ←→ Query33.4286
NC_013282:116649*Cronobacter turicensis, complete genome78.0607 %Subject ←→ Query33.8673
NC_012912:777592*Dickeya zeae Ech1591, complete genome75.0245 %Subject ←→ Query33.9737
NC_007645:2533274Hahella chejuensis KCTC 2396, complete genome75.2083 %Subject ←→ Query34.5787
NC_002695:4153394*Escherichia coli O157:H7 str. Sakai, complete genome76.3021 %Subject ←→ Query34.7398
NC_013282:3962188*Cronobacter turicensis, complete genome76.3695 %Subject ←→ Query34.8164
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome75.723 %Subject ←→ Query34.9445
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome77.1722 %Subject ←→ Query35.1593
NC_006511:4119332*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC77.6195 %Subject ←→ Query35.1897
NC_010694:614985Erwinia tasmaniensis, complete genome75.1654 %Subject ←→ Query35.5876
NC_003198:3586000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.3303 %Subject ←→ Query35.6335
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str77.9044 %Subject ←→ Query35.749
NC_010473:4256000*Escherichia coli str. K-12 substr. DH10B, complete genome76.1305 %Subject ←→ Query36.1868
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC76.0386 %Subject ←→ Query36.3874
NC_003197:4005857Salmonella typhimurium LT2, complete genome76.3327 %Subject ←→ Query36.3904
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,86.5257 %Subject ←→ Query36.512
NC_011080:3976441Salmonella enterica subsp. enterica serovar Newport str. SL254,76.1489 %Subject ←→ Query36.5166
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,75.4504 %Subject ←→ Query36.5643
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome81.3419 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,75.0766 %Subject ←→ Query37.0114
NC_008150:1420825*Yersinia pestis Antiqua, complete genome76.4185 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome76.1979 %Subject ←→ Query37.035
NC_010102:3955479Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.8689 %Subject ←→ Query37.2943
NC_003143:2137945*Yersinia pestis CO92, complete genome76.5043 %Subject ←→ Query37.3318
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome75.7751 %Subject ←→ Query37.5286
NC_011083:4020000Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,75.9498 %Subject ←→ Query37.6885
NC_014500:894136Dickeya dadantii 3937 chromosome, complete genome75.2604 %Subject ←→ Query37.8586
NC_011149:3930358Salmonella enterica subsp. enterica serovar Agona str. SL483,75.7874 %Subject ←→ Query38.0507
NC_010468:4455201*Escherichia coli ATCC 8739, complete genome76.4277 %Subject ←→ Query38.0958
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,86.1152 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome77.9504 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC82.6134 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome78.9246 %Subject ←→ Query38.8742
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,75.7138 %Subject ←→ Query39.4334
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str85.769 %Subject ←→ Query39.786
NC_013282:3216226*Cronobacter turicensis, complete genome78.2812 %Subject ←→ Query41.2788
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence76.6115 %Subject ←→ Query42.151
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome78.0453 %Subject ←→ Query43.5401
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome76.0999 %Subject Query45.4902