Pre_GI: BLASTP Hits

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Query: NC_017214:1727676:1728551 Bifidobacterium animalis subsp. lactis BB-12 chromosome, complete

Start: 1728551, End: 1729246, Length: 696

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017215:1091941:109343310934331094128696Bifidobacterium animalis subsp. lactis CNCM I-2494 chromosome,GntR family transcriptional regulator9e-126449
NC_017217:1092916:109379110937911094327537Bifidobacterium animalis subsp. lactis V9 chromosome, completehypothetical protein1e-91335
NC_012814:1092860:109373510937351094271537Bifidobacterium animalis subsp. lactis Bl-04, complete genomehypothetical protein1e-91335
NC_012815:1092795:109367010936701094206537Bifidobacterium animalis subsp. lactis DSM 10140, complete genomehypothetical protein1e-91335
NC_017216:1092751:109362610936261094045420Bifidobacterium animalis subsp. lactis BLC1, complete genometranscriptional regulator, gntR family protein3e-66251
NC_011835:1819707:182058218205821821001420Bifidobacterium animalis subsp. lactis AD011 chromosome, completeregulatory protein GntR3e-66251
NC_019897:329945:376575376575376955381Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator6e-2097.8
NC_015949:47414:482944829448677384Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator2e-1996.3
NC_009848:161373:170355170355170726372Bacillus pumilus SAFR-032, complete genomeGntR family transcriptional regulator7e-1890.9
UCMB5137:2128500:214259721425972142974378Bacillus atrophaeus UCMB-5137GntR family transcriptional regulator2e-1789.7
NC_017219:2014605:202231920223192022693375Bifidobacterium longum subsp. infantis ATCC 15697, complete genometranscriptional regulator2e-1789
NC_011593:2014787:202250120225012022875375Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR2e-1789
NC_014639:2169277:217930621793062179683378Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator3e-1788.6
CP002207:2169277:217930621793062179683378Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator3e-1788.6
NC_014833:1045180:106518010651801065554375Ruminococcus albus 7 chromosome, complete genomeGntR family transcriptional regulator2e-1685.9
NC_020164:887510:906911906911907288378Staphylococcus warneri SG1, complete genomeGntR family transcriptional regulator4e-1581.6
NC_002976:1540794:154170815417081542085378Staphylococcus epidermidis RP62A, complete genometranscriptional regulator, GntR family2e-1479
NC_016631:5478098:550109155010915501534444Granulicella mallensis MP5ACTX8 chromosome, complete genomeGntR family transcriptional regulator5e-1374.7
NC_018515:1406816:142889914288991429282384Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator1e-1273.6
NC_009725:2859630:286726728672672867659393Bacillus amyloliquefaciens FZB42, complete genomeYtrA4e-1271.6
NC_014363:114239:129522129522129881360Olsenella uli DSM 7084 chromosome, complete genometranscriptional regulator, GntR family2e-1169.7
NC_008593:1917118:191914919191491919529381Clostridium novyi NT, complete genometranscriptional regulator, gntR family1e-1066.6
NC_019842:484933:5413965413965427781383Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,GntR family transcriptional regulator2e-1065.9
NC_020410:495184:5368715368715382531383Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative transcriptional regulator (GntR family)2e-1065.9
NC_020272:3396800:3396800339680033981821383Bacillus amyloliquefaciens IT-45, complete genomeGntR family transcriptional regulator4e-1065.1
NC_014393:92500:928219282193204384Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, GntR family5e-1064.7
NC_015425:2144639:214552921455292145924396Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator5e-1064.7
NC_014152:1:206392063921016378Thermincola sp. JR, complete genometranscriptional regulator, GntR family9e-1063.9
NC_010001:2836995:285926328592632859625363Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family1e-0963.5
NC_012658:545840:5538595538595553101452Clostridium botulinum Ba4 str. 657 chromosome, complete genomeGntR family transcriptional regulator2e-0962.8
NC_014829:3964616:398018939801893980911723Bacillus cellulosilyticus DSM 2522 chromosome, complete genometranscriptional regulator, GntR family2e-0962.8
NC_010999:2450974:245773324577332458107375Lactobacillus casei, complete genomeRegulatory protein GntR, HTH3e-0962.4
NC_011899:1603500:1607699160769916088051107Halothermothrix orenii H 168, complete genomeregulatory protein GntR HTH3e-0962
NC_008593:2457594:247967724796772480045369Clostridium novyi NT, complete genometranscriptional regulator, GntR family5e-0961.2
NC_013205:1275012:129900712990071299420414Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, GntR family5e-0961.2
NC_012778:1946924:195058319505831950966384Eubacterium eligens ATCC 27750, complete genomeGntR family transcriptional regulator / MocR family aminotransferase6e-0961.2
NC_012673:2535427:257491425749142575303390Exiguobacterium sp. AT1b, complete genometranscriptional regulator, GntR family6e-0961.2
NC_013642:545464:565944565944566309366Thermotoga naphthophila RKU-10, complete genometranscriptional regulator, GntR family1e-0860.5
NC_009486:155651:155651155651156016366Thermotoga petrophila RKU-1 chromosome, complete genomeregulatory protein GntR1e-0860.5
NC_015425:2690448:271266827126682713036369Clostridium botulinum BKT015925 chromosome, complete genomeGntR family transcriptional regulator9e-0960.5
NC_000853:771746:792240792240792605366Thermotoga maritima MSB8, complete genometranscriptional regulator, GntR family1e-0860.1
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family2e-0859.7
NC_014639:3584000:3600028360002836014101383Bacillus atrophaeus 1942 chromosome, complete genomeGntR family transcriptional regulator3e-0858.9
CP002207:3584000:3600028360002836014101383Bacillus atrophaeus 1942, complete genomeGntR family transcriptional regulator3e-0858.9
NC_004557:2711702:272619827261982727172975Clostridium tetani E88, complete genometranscriptional regulator, putative regular for glutamate degradation3e-0858.5
NC_015589:3085442:309769230976923098066375Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein GntR3e-0858.5
NC_013929:5248000:526121052612105261998789Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator7e-0857.8
NC_014328:4387303:442000144200014420978978Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative regulatory protein6e-0857.8
NC_020210:661236:6629116629116642901380Geobacillus sp. GHH01, complete genomeputative PLP-dependent transcriptional regulator9e-0857.4
NC_009706:238160:267607267607268584978Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator9e-0857.4
NC_011837:238160:267607267607268584978Clostridium kluyveri NBRC 12016, complete genomehypothetical protein9e-0857.4
NC_003155:4592000:462092046209204621708789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator8e-0857.4
NC_006905:3913988:392410639241063924849744Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family8e-0857.4
NC_003198:3855157:386361438636143864357744Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative GntR-family transcriptional regulator1e-0757
NC_004631:3841975:384910438491043849847744Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative GntR-family transcriptional regulator1e-0757
NC_011083:3985618:399864839986483999391744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative GntR-family transcriptional regulator1e-0757
NC_011149:3895921:390895139089513909694744Salmonella enterica subsp. enterica serovar Agona str. SL483,putative GntR-family transcriptional regulator1e-0757
NC_011080:3941909:395502339550233955766744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative GntR-family transcriptional regulator1e-0757
NC_006511:3759550:377257137725713773314744Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative GntR-family transcriptional regulator1e-0757
NC_010102:3919999:393253339325333933276744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0757
NC_003197:3971905:398443939844393985182744Salmonella typhimurium LT2, complete genomeputative regulatory protein1e-0757
NC_011094:3853036:386615138661513866894744Salmonella enterica subsp. enterica serovar Schwarzengrund strGntR family transcriptional regulator1e-0757
NC_011147:3755725:376825037682503768993744Salmonella enterica subsp. enterica serovar Paratyphi A strGntR family transcriptional regulator1e-0757
NC_016745:123772:1251211251211265391419Oceanimonas sp. GK1 chromosome, complete genomeGntR family transcriptional regulator1e-0757
NC_014328:3482980:3506242350624235076901449Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative transcriptional regulator1e-0757
NC_007777:5087405:509495850949585095722765Frankia sp. CcI3, complete genometranscriptional regulator, GntR family1e-0757
NC_017046:3991551:400458040045804005323744Salmonella enterica subsp. enterica serovar Typhimurium str. 798GntR family transcriptional regulator1e-0757
NC_016863:3933848:394573839457383946481744Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative regulatory protein1e-0757
NC_016857:3993864:400575340057534006496744Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74GntR family transcriptional regulator1e-0757
NC_016856:3985597:399813139981313998874744Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein1e-0757
NC_016810:3993863:400575240057524006495744Salmonella enterica subsp. enterica serovar Typhimurium strGntR family transcriptional regulator1e-0757
NC_016860:4055117:409005140900514090293243Salmonella enterica subsp. enterica serovar Typhimurium strGntR family transcriptional regulator1e-0756.6
NC_013204:2826500:282801928280192828498480Eggerthella lenta DSM 2243, complete genometranscriptional regulator, GntR family1e-0756.6
NC_006510:746814:7646947646947660731380Geobacillus kaustophilus HTA426, complete genometranscriptional regulator (GntR family)1e-0756.6
NC_016593:762216:7800187800187813971380Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator (GntR family)1e-0756.6
NC_012781:2148478:215126721512672151716450Eubacterium rectale ATCC 33656, complete genometranscriptional regulator, GntR family2e-0756.2
NC_003155:4906639:491297149129714913759789Streptomyces avermitilis MA-4680, complete genomeregulatory protein KorSA, GntR-family transcriptional regulator2e-0756.2
NC_011593:2014787:201901720190172019466450Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,regulatory protein GntR2e-0756.2
NC_017219:2014605:201883520188352019284450Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-0756.2
NC_015949:71474:862228622286587366Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeGntR family transcriptional regulator2e-0756.2
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome2e-0755.8
NC_004557:691944:7010227010227024671446Clostridium tetani E88, complete genometranscriptional regulatory protein2e-0755.8
NC_013510:5499447:551960755196075520026420Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, GntR family3e-0755.8
NC_006905:3717306:373309237330923733811720Salmonella enterica subsp. enterica serovar Choleraesuis strputative regulatory protein, gntR family3e-0755.5
NC_014165:92500:101315101315101695381Thermobispora bispora DSM 43833 chromosome, complete genomeGntR family transcriptional regulator4e-0755.1
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator5e-0754.7
NC_015563:4773415:478062647806264781414789Delftia sp. Cs1-4 chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain5e-0754.7
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator5e-0754.7
NC_013716:1618249:162483116248311625787957Citrobacter rodentium ICC168, complete genomeputative GntR-family transcriptional regulator7e-0754.3
NC_010556:6612:1726217262186561395Exiguobacterium sibiricum 255-15, complete genomeputative transcriptional regulator, GntR family8e-0753.9
NC_011146:3537546:3546585354658535479791395Geobacter bemidjiensis Bem, complete genomeputative transcriptional regulator, GntR family8e-0753.9
NC_006526:1976779:1999286199928620006591374Zymomonas mobilis subsp. mobilis ZM4, complete genometranscriptional regulatory protein9e-0753.9
NC_004193:375416:640434640434641180747Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-0653.9
NC_009952:592000:6018436018436033871545Dinoroseobacter shibae DFL 12, complete genometranscriptional regulator, GntR family with aminotransferase domain1e-0653.9
NC_018665:1:1721317213186071395Exiguobacterium antarcticum B7 chromosome, complete genomeTranscriptional regulator, GntR family1e-0653.5
NC_003366:461602:4684394684394700011563Clostridium perfringens str. 13, complete genomeprobable transcription regulator1e-0653.5
NC_018515:3169973:318893631889363189691756Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator2e-0653.1
NC_008262:2649289:265001426500142650736723Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family2e-0652.8
NC_018000:1914945:1958731195873119602301500Sinorhizobium fredii USDA 257 chromosome, complete genomerhizopine catabolism regulatory protein MocR2e-0652.8
NC_014910:2015627:202915620291562029947792Alicycliphilus denitrificans BC chromosome, complete genomeubic transcription regulator-associated domain-containing protein2e-0652.8
NC_007677:1872459:188881218888121889792981Salinibacter ruber DSM 13855, complete genometranscriptional regulator, GntR family protein2e-0652.8
NC_008262:419726:4197264197264212851560Clostridium perfringens SM101, complete genometranscriptional regulator, GntR family/aminotransferase2e-0652.8
NC_017208:64500:8740587405888171413Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeGntR family transcriptional regulator2e-0652.8
NC_013595:9547254:956146795614679561802336Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family2e-0652.8
NC_008261:421000:4252114252114267731563Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, GntR family/aminotransferase3e-0652.4
NC_015389:1977736:198394319839431984632690Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, GntR family3e-0652.4
NC_018515:4442500:445361844536184454571954Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator3e-0652.4
NC_016582:5393568:540514154051415405914774Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0652.4
NC_013166:82986:869848698487373390Kangiella koreensis DSM 16069, complete genometranscriptional regulator, GntR family3e-0652.4
NC_016582:7101701:711106371110637111593531Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator protein4e-0652
NC_003888:3602753:361362836136283614359732Streptomyces coelicolor A3(2), complete genomegntR-family regulator3e-0652
NC_009633:1595501:1620053162005316214501398Alkaliphilus metalliredigens QYMF chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_015957:1070500:107590210759021076678777Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator3e-0652
NC_008314:1559102:1578044157804415794771434Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, MocR family5e-0651.6
NC_014210:723719:733347733347734111765Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family5e-0651.6
NC_003030:279643:297523297523297888366Clostridium acetobutylicum ATCC 824, complete genomeTranscriptional regulator, GntR family5e-0651.6
NC_015687:279641:297521297521297886366Clostridium acetobutylicum DSM 1731 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_017295:279633:297513297513297878366Clostridium acetobutylicum EA 2018 chromosome, complete genomeGntR family transcriptional regulator5e-0651.6
NC_008346:2579756:258415125841512584543393Syntrophomonas wolfei subsp. wolfei str. Goettingen, completetranscriptional regulator, GntR family5e-0651.6
NC_013165:329185:374694374694375074381Slackia heliotrinireducens DSM 20476, complete genomepredicted transcriptional regulator4e-0651.6
NC_015656:1469501:148617614861761486967792Frankia symbiont of Datisca glomerata chromosome, complete genomeGntR family transcriptional regulator with UTRA sensor domain4e-0651.6
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH4e-0651.6
NC_015580:3411802:3429384342938434308771494Novosphingobium sp. PP1Y, complete genomeGntR family transcriptional regulator / MocR family aminotransferase6e-0651.2
NC_013729:2258582:227234522723452272686342Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family6e-0651.2
NC_015556:2265940:2291096229109622925951500Pseudomonas fulva 12-X chromosome, complete genometranscriptional regulator, GntR family with aminotransferase domain6e-0651.2
NC_009654:91096:9749297492990691578Marinomonas sp. MWYL1, complete genomeGntR family transcriptional regulator7e-0650.8
NC_018515:3600869:362844736284473629145699Desulfosporosinus meridiei DSM 13257 chromosome, complete genometranscriptional regulator7e-0650.8
NC_014210:5270643:528191152819115282651741Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family8e-0650.8
NC_017075:4259460:4274291427429142757481458Rubrivivax gelatinosus IL144, complete genomeDeoR family transcriptional regulator8e-0650.8
NC_009828:1530732:153604915360491536768720Thermotoga lettingae TMO, complete genometranscriptional regulator, GntR family8e-0650.8
NC_009718:579291:597946597946598323378Fervidobacterium nodosum Rt17-B1, complete genomeregulatory protein GntR HTH1e-0550.4