Pre_GI: BLASTP Hits

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Query: NC_010001:4128034:4145767 Clostridium phytofermentans ISDg, complete genome

Start: 4145767, End: 4146588, Length: 822

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016048:184500:212424212424213251828Oscillibacter valericigenes Sjm18-20, complete genomeputative DNA lyase2e-62239
NC_004663:2935060:293970929397092940530822Bacteroides thetaiotaomicron VPI-5482, complete genomeformamidopyrimidine-DNA glycosylase9e-55213
NC_016745:675909:678543678543679355813Oceanimonas sp. GK1 chromosome, complete genomeformamidopyrimidine-DNA glycosylase3e-1479
NC_007797:411630:427134427134427940807Anaplasma phagocytophilum HZ, complete genomeformamidopyrimidine-DNA glycosylase4e-1479
NC_020063:97436:974369743698245810Enterobacteriaceae bacterium strain FGI 57, complete genomeformamidopyrimidine-DNA glycosylase Fpg5e-1478.6
NC_009792:4658909:467562746756274676436810Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-1273.9
NC_011149:3822000:384049838404983841307810Salmonella enterica subsp. enterica serovar Agona str. SL483,formamidopyrimidine-DNA glycosylase1e-1273.6
NC_010067:3846962:384722738472273848036810Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-1272.8
NC_003198:3924952:392635739263573927166810Salmonella enterica subsp. enterica serovar Typhi str. CT18,formamidopyrimidine-DNA glycosylase4e-1272
NC_006511:3690828:370979037097903710599810Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCformamidopyrimidine-DNA glycosylase4e-1272
NC_004631:3910451:391185639118563912665810Salmonella enterica subsp. enterica serovar Typhi Ty2, completeformamidopyrimidine-DNA glycosylase4e-1272
NC_011094:3778000:379721737972173798026810Salmonella enterica subsp. enterica serovar Schwarzengrund strformamidopyrimidine-DNA glycosylase4e-1272
NC_011147:3686500:370546737054673706276810Salmonella enterica subsp. enterica serovar Paratyphi A strformamidopyrimidine-DNA glycosylase4e-1272
NC_011274:3894387:389579238957923896601810Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91formamidopyrimidine-DNA glycosylase4e-1272
NC_011294:3782655:380223538022353803044810Salmonella enterica subsp. enterica serovar Enteritidis strformamidopyrimidine-DNA glycosylase4e-1272
NC_016831:3875134:387653938765393877348810Salmonella enterica subsp. enterica serovar Gallinarum/pullorumformamidopyrimidine-DNA glycosylase4e-1272
NC_016832:3900000:390065339006533901462810Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Formamidopyrimidine-DNA glycosylase4e-1272
NC_015717:4736500:475363647536364754514879Hyphomicrobium sp. MC1, complete genomeformamidopyrimidine-DNA glycosylase4e-1272
NC_010102:3851500:387007838700783870887810Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-1271.6
NC_013421:4790696:481053948105394811348810Pectobacterium wasabiae WPP163, complete genomeformamidopyrimidine-DNA glycosylase8e-1271.2
NC_003197:3902500:392113139211313921940810Salmonella typhimurium LT2, complete genomeformamidopyrimidine-DNA glycosylase7e-1271.2
NC_011083:3915500:393414139341413934950810Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,formamidopyrimidine-DNA glycosylase7e-1271.2
NC_016810:3923988:394244539424453943254810Salmonella enterica subsp. enterica serovar Typhimurium strformamidopyrimidine-DNA glycosylase7e-1271.2
NC_016856:3916500:393482339348233935632810Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sformamidopyrimidine-DNA glycosylase7e-1271.2
NC_016857:3924000:394244639424463943255810Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74formamidopyrimidine-DNA glycosylase7e-1271.2
NC_016860:3925500:394402739440273944836810Salmonella enterica subsp. enterica serovar Typhimurium strformamidopyrimidine-DNA glycosylase7e-1271.2
NC_016863:3864000:388243038824303883239810Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1formamidopyrimidine-DNA glycosylase7e-1271.2
NC_017046:3923000:394127239412723942081810Salmonella enterica subsp. enterica serovar Typhimurium str. 798formamidopyrimidine-DNA glycosylase7e-1271.2
NC_013850:109500:128612128612129421810Klebsiella variicola At-22 chromosome, complete genomeformamidopyrimidine-DNA glycosylase7e-1271.2
NC_011283:105245:123416123416124225810Klebsiella pneumoniae 342 chromosome, complete genomeformamidopyrimidine-DNA glycosylase8e-1270.9
NC_017223:3345902:337424433742443375071828Bordetella pertussis CS chromosome, complete genomeformamidopyrimidine-DNA glycosylase9e-1270.9
NC_002929:3305682:333402433340243334851828Bordetella pertussis Tohama I, complete genomeformamidopyrimidine-DNA glycosylase9e-1270.9
NC_015761:3611993:363097136309713631780810Salmonella bongori NCTC 12419, complete genomeformamidopyrimidine-DNA glycosylase1e-1170.5
NC_004547:164000:168516168516169325810Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeformamidopyrimidine-DNA glycosylase1e-1170.5
NC_009952:3522370:354195135419513542805855Dinoroseobacter shibae DFL 12, complete genomeformamidopyrimidine-DNA glycosylase1e-1170.5
NC_011205:3942500:396083239608323961641810Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853formamidopyrimidine-DNA glycosylase1e-1170.1
NC_006905:3845000:386343138634313864240810Salmonella enterica subsp. enterica serovar Choleraesuis strformamidopyrimidine-DNA glycosylase2e-1170.1
NC_012125:3840000:385828638582863859095810Salmonella enterica subsp. enterica serovar Paratyphi C strainformamidopyrimidine-DNA glycosylase2e-1169.7
NC_011080:3875320:389428238942823895091810Salmonella enterica subsp. enterica serovar Newport str. SL254,formamidopyrimidine-DNA glycosylase2e-1169.7
NC_013716:4408201:440969244096924410501810Citrobacter rodentium ICC168, complete genomeformamidopyrimidine-DNA glycosylase7e-1167.8
NC_016816:127802:147796147796148605810Pantoea ananatis LMG 5342, complete genomeFormamidopyrimidine-DNA glycosylase8e-1167.8
NC_010718:1959517:198209919820991982986888Natranaerobius thermophilus JW/NM-WN-LF, complete genomeformamidopyrimidine-DNA glycosylase1e-1067
NC_008253:3896704:391481339148133915622810Escherichia coli 536, complete genomeformamidopyrimidine-DNA glycosylase4e-1065.5
NC_004431:4223232:424134142413414242150810Escherichia coli CFT073, complete genomeformamidopyrimidine-DNA glycosylase5e-1065.1
NC_016513:689689:701062701062701919858Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeformamidopyrimidine-DNA glycosyllase6e-1064.7
NC_013416:386301:397673397673398530858Aggregatibacter actinomycetemcomitans D11S-1, complete genomeheptosyltransferase family6e-1064.7
NC_007606:3784847:380261238026123803421810Shigella dysenteriae Sd197, complete genomeformamidopyrimidine DNA glycosylase8e-1064.3
NC_017303:1454841:146624914662491467106858Corynebacterium pseudotuberculosis I19 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase9e-1064.3
NC_014221:266638:269038269038269841804Truepera radiovictrix DSM 17093 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.9
NC_018145:147759:158220158220159032813Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeformamidopyrimidine-DNA glycosylase1e-0963.9
NC_004337:3761865:378065737806573781466810Shigella flexneri 2a str. 301, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_010658:3774110:379316537931653793974810Shigella boydii CDC 3083-94, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_008258:3995553:399692139969213997730810Shigella flexneri 5 str. 8401, complete genomeformamidopyrimidine DNA glycosylase1e-0963.5
NC_007946:4050762:406887140688714069680810Escherichia coli UTI89, complete genomeformamidopyrimidine DNA glycosylase1e-0963.5
CU928160:3862935:388102638810263881835810Escherichia coli IAI1 chromosome, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase1e-0963.5
NC_004337:3590323:378065737806573781466810Shigella flexneri 2a str. 301, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011740:4007000:402705440270544027863810Escherichia fergusonii ATCC 35469, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase1e-0963.5
NC_002695:4537000:455420245542024555011810Escherichia coli O157:H7 str. Sakai, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_007613:3637832:365594136559413656750810Shigella boydii Sb227, complete genomeformamidopyrimidine DNA glycosylase1e-0963.5
NC_010498:4031500:404836440483644049173810Escherichia coli SMS-3-5, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_010468:80000:806238062381432810Escherichia coli ATCC 8739, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_007384:3956465:395673039567303957539810Shigella sonnei Ss046, complete genomeformamidopyrimidine DNA glycosylase1e-0963.5
NC_009801:4108179:412627941262794127088810Escherichia coli E24377A, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_008563:4083558:410166741016674102476810Escherichia coli APEC O1, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_004741:3992384:399379139937913994600810Shigella flexneri 2a str. 2457T, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_017328:3794105:381285738128573813666810Shigella flexneri 2002017 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase1e-0963.5
NC_016822:4093000:409359040935904094399810Shigella sonnei 53G, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase1e-0963.5
NC_013941:4427000:444414744441474444956810Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeformamidopyrimidine-DNA glycosylase (Fapy-DNA glycosylase) (DNA-(apurinic or apyrimidinic site) lyase mutM)1e-0963.5
NC_013364:4460500:447774444777444478553810Escherichia coli O111:H- str. 11128, complete genomeformamidopyrimidine/5-formyluracil/5- hydroxymethyluracil DNA glycosylase1e-0963.5
NC_013361:4991020:499242749924274993236810Escherichia coli O26:H11 str. 11368 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_013008:4595043:461334746133474614156810Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011745:4226186:424450742445074245316810Escherichia coli ED1a chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011742:3998285:401639440163944017203810Escherichia coli S88 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011741:3862935:388102638810263881835810Escherichia coli IAI1 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011601:4036590:405671340567134057522810Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011415:4040211:405853340585334059342810Escherichia coli SE11 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011353:4639002:465730646573064658115810Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
NC_011751:4251296:426962142696214270430810Escherichia coli UMN026 chromosome, complete genomeformamidopyrimidine-DNA glycosylase1e-0963.5
CU928145:4167043:418536541853654186174810Escherichia coli 55989 chromosome, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase2e-0963.2
CP002185:3998112:401621240162124017021810Escherichia coli W, complete genomeformamidopyrimidine/5-formyluracil/5- hydroxymethyluracil DNA glycosylase2e-0963.2
CP002516:88500:890528905289861810Escherichia coli KO11, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
AP010958:4668181:466958846695884670397810Escherichia coli O103:H2 str. 12009 DNA, complete genomeformamidopyrimidine/5-formyluracil/5- hydroxymethyluracil DNA glycosylase2e-0963.2
NC_009800:3821824:383992438399243840733810Escherichia coli HS, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_009511:5362705:538091953809195381731813Sphingomonas wittichii RW1 chromosome, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_006526:1202000:120865712086571209469813Zymomonas mobilis subsp. mobilis ZM4, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_010473:3883701:390594339059433906752810Escherichia coli str. K-12 substr. DH10B, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase2e-0963.2
NC_000913:3786124:380836638083663809175810Escherichia coli K12, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_011748:4167043:418536541853654186174810Escherichia coli 55989, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
AC_000091:3827856:382926338292633830072810Escherichia coli W3110 DNA, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase2e-0963.2
NC_012759:3675396:369669236966923697501810Escherichia coli BW2952 chromosome, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_012947:94930:949309493095739810Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_012967:3729813:374869837486983749507810Escherichia coli B str. REL606 chromosome, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_013353:4668181:466958846695884670397810Escherichia coli O103:H2 str. 12009, complete genomeformamidopyrimidine/5-formyluracil/5- hydroxymethyluracil DNA glycosylase2e-0963.2
NC_016902:88500:890528905289861810Escherichia coli KO11FL chromosome, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_011750:4307166:432526343252634326072810Escherichia coli IAI39 chromosome, complete genomeformamidopyrimidine-DNA glycosylase2e-0963.2
NC_003919:5056650:506463450646345065449816Xanthomonas axonopodis pv. citri str. 306, complete genomeformamidopyrimidine-DNA glycosylase2e-0962.8
NC_013971:73037:104148104148104957810Erwinia amylovora ATCC 49946 chromosome, complete genomeformamidopyrimidine-DNA glycosylase3e-0962.4
NC_013961:73037:104148104148104957810Erwinia amylovora, complete genomeformamidopyrimidine DNA glycosylase3e-0962.4
NC_012913:2189862:219462421946242195439816Aggregatibacter aphrophilus NJ8700, complete genomeheptosyltransferase family4e-0962
NC_018691:198909:226189226189226998810Alcanivorax dieselolei B5 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase 27e-0961.2
NC_002655:4606000:462318546231854623994810Escherichia coli O157:H7 EDL933, complete genomeformamidopyrimidine-DNA glycosylase7e-0961.2
NC_011901:342777:360929360929361744816Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeDNA-formamidopyrimidine glycosylase8e-0961.2
NC_014313:3617910:363570536357053636586882Hyphomicrobium denitrificans ATCC 51888 chromosome, completeformamidopyrimidine-DNA glycosylase1e-0860.8
NC_011772:4487378:451608545160854516915831Bacillus cereus G9842, complete genomeformamidopyrimidine-DNA glycosylase9e-0960.8
NC_017317:1598925:160851416085141609371858Corynebacterium ulcerans 809 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase2e-0860.1
NC_007513:1764739:177004717700471770883837Synechococcus sp. CC9902, complete genomeFormamidopyrimidine-DNA glycolase4e-0858.5
NC_007912:4661141:466402046640204664835816Saccharophagus degradans 2-40, complete genomePseudouridine synthase, Rsu5e-0858.5
NC_021172:3786725:380490838049083805789882Hyphomicrobium denitrificans 1NES1, complete genomeformamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase6e-0858.2
NC_021184:504728:514592514592515197606Desulfotomaculum gibsoniae DSM 7213, complete genomeformamidopyrimidine-DNA glycosylase1e-0757.4
NC_010084:534937:566333566333567160828Burkholderia multivorans ATCC 17616 chromosome 1, completeformamidopyrimidine-DNA glycosylase7e-0754.7
NC_008601:631504:635459635459636283825Francisella tularensis subsp. novicida U112, complete genomeformamidopyrimidine-DNA glycosylase7e-0754.7
NC_008245:707984:711545711545712369825Francisella tularensis subsp. tularensis FSC 198, complete genomeFormamidopyrimidine-DNA glycosylase7e-0754.7
NC_006570:707280:711593711593712417825Francisella tularensis subsp. tularensis Schu 4, complete genomeFormamidopyrimidine-DNA glycosylase7e-0754.7
NC_007880:1456705:147308214730821473906825Francisella tularensis subsp. holarctica, complete genomeFormamidopyrimidine-DNA glycosylase7e-0754.7
NC_016933:783938:787499787499788323825Francisella tularensis TIGB03 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase7e-0754.7
NC_016937:707279:711592711592712416825Francisella tularensis subsp. tularensis TI0902 chromosome,Formamidopyrimidine-DNA glycosylase7e-0754.7
NC_004829:312750:331472331472332299828Mycoplasma gallisepticum R, complete genomeformamidopyrimidine-DNA glycosylase1e-0653.9
NC_016023:2163000:219299521929952193798804Bacillus coagulans 36D1 chromosome, complete genomeFormamidopyrimidine-DNA glycosylase catalytic domain-containing protein4e-0652
NC_014501:5419958:542337554233755424208834Cyanothece sp. PCC 7822 chromosome, complete genomeformamidopyrimidine-DNA glycosylase6e-0651.6