Pre_GI: BLASTP Hits

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Query: NC_009381:2939782:2958120 Yersinia pestis Pestoides F chromosome, complete genome

Start: 2958120, End: 2958296, Length: 177

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Atypical strain isolated from the former Soviet Union, USSR. This strain lacks a plasminogen activator and is virulent by the aerosol route. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:4155143:415617941561794156355177Yersinia pestis A1122 chromosome, complete genomeprophage CP4-57 integrase3e-26117
NC_008150:650899:650899650899651075177Yersinia pestis Antiqua, complete genomehypothetical protein3e-26117
NC_008149:3251196:326953532695353269711177Yersinia pestis Nepal516, complete genomehypothetical protein3e-26117
NC_004547:913553:9255419255419268211281Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeprophage integrase2e-1478.2
NC_004088:3382148:3390110339011033913421233Yersinia pestis KIM, complete genomeprophage CP4-57 integrase3e-1477
NC_005810:1130251:1138213113821311394451233Yersinia pestis biovar Microtus str. 91001, complete genomeprophage CP4-57 integrase3e-1477
NC_008149:3251196:3259191325919132603901200Yersinia pestis Nepal516, complete genomeprophage integrase4e-1476.6
NC_008150:650899:6602206602206614191200Yersinia pestis Antiqua, complete genomeputative prophage integrase4e-1476.6
NC_010159:1417993:1427636142763614288351200Yersinia pestis Angola, complete genomeprophage CP4-57 integrase4e-1476.6
NC_003143:1233128:1243484124348412446831200Yersinia pestis CO92, complete genomeputative prophage integrase4e-1476.6
NC_009381:2939782:2947777294777729489761200Yersinia pestis Pestoides F chromosome, complete genomeprophage integrase4e-1476.6
NC_014029:1283500:1292681129268112938801200Yersinia pestis Z176003 chromosome, complete genomeputative prophage integrase4e-1476.6
NC_017154:1225500:1234774123477412359731200Yersinia pestis D106004 chromosome, complete genomeputative prophage integrase4e-1476.6
NC_017160:1507500:1515638151563815168371200Yersinia pestis D182038 chromosome, complete genomeputative prophage integrase4e-1476.6
NC_017168:4155143:4165500416550041666991200Yersinia pestis A1122 chromosome, complete genomeputative prophage integrase4e-1476.6
NC_017265:1136000:1144814114481411460131200Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative prophage integrase4e-1476.6
NC_016818:3736213:374490437449043745098195Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein3e-1373.9
NC_003143:1233128:123423912342391234340102Yersinia pestis CO92, complete genomephage integrase (partial)2e-1168.2
NC_008800:1090000:109688410968841097051168Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,5e-1166.2
NC_013956:3273340:329382432938243294216393Pantoea ananatis LMG 20103 chromosome, complete genomeIntA2e-1064.3
NC_011080:2870428:2878326287832628795191194Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase family protein3e-1063.9
NC_011740:448000:4580014580014592001200Escherichia fergusonii ATCC 35469, complete genomephage integrase3e-1063.9
NC_013508:2870954:2877923287792328791191197Edwardsiella tarda EIB202, complete genomeputative integrase4e-1063.5
NC_016857:2871689:2890073289007328912691197Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74site-specific recombinase, phage integrase family6e-1062.8
NC_016810:2871689:2890073289007328912691197Salmonella enterica subsp. enterica serovar Typhimurium strbacteriophage integrase6e-1062.8
NC_012917:833721:8440428440428452501209Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein6e-1062.8
NC_009436:3367194:3375316337531633765031188Enterobacter sp. 638, complete genomephage integrase family protein2e-0961.2
NC_009778:567000:6006176006176018161200Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0960.5
NC_021066:5342127:5364388536438853656081221Raoultella ornithinolytica B6, complete genomehypothetical protein4e-0960.5
NC_010102:2862178:2868695286869528698911197Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0858.2
NC_008118:56777:764067640676759354Yersinia pestis Nepal516 plasmid pMT, complete sequencehypothetical protein5e-0753.1
NC_008149:2652825:267529326752932676180888Yersinia pestis Nepal516, complete genomehypothetical protein5e-0753.1
NC_014500:2019113:2046545204654520477951251Dickeya dadantii 3937 chromosome, complete genomePhage integrase1e-0652
NC_012880:3748665:3775059377505937763001242Dickeya dadantii Ech703, complete genomeintegrase family protein2e-0651.6
NC_008149:3648139:3656620365662036600333414Yersinia pestis Nepal516, complete genomehypothetical protein2e-0651.2
NC_012917:1840172:1878205187820518794341230Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeintegrase family protein2e-0651.2
NC_008150:3711953:3735424373542437388373414Yersinia pestis Antiqua, complete genomehypothetical protein2e-0651.2
NC_017154:848500:8569818569818603943414Yersinia pestis D106004 chromosome, complete genomenonribosomal peptide synthetase/polyketide synthase2e-0651.2
NC_017168:4509918:4513043451304345164563414Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-0651.2
NC_010634:1342393:134342913434291343818390Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein4e-0650.4
NC_017265:2087487:208969020896902089815126Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Nonribosomal peptide synthetase/polyketidesynthase5e-0649.7
NC_012880:2778795:2778795277879527800451251Dickeya dadantii Ech703, complete genomeintegrase family protein6e-0649.7