Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1367514 Shigella boydii Sb227, complete genome

Start: 1367514, End: 1370321, Length: 2808

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015410:2351464:2384959238495923875112553Pseudomonas mendocina NK-01 chromosome, complete genomephage tail fiber protein2e-108394
NC_014228:3022903:3028711302871130315002790Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-96354
NC_006155:2084669:2099162209916221015882427Yersinia pseudotuberculosis IP 32953, complete genomeputative bacteriophage P2 tail protein gpT2e-91337
NC_020181:5130513:5167884516788451703252442Enterobacter aerogenes EA1509E, complete genomecorresponds to STY4603 from Accession AL513382: Salmonella typhi CT184e-91337
NC_012779:3016327:3020718302071830235402823Edwardsiella ictaluri 93-146, complete genomephage tail tape measure protein, family, putative2e-86321
NC_009648:3803622:3805284380528438077222439Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail length determinator4e-81303
NC_016845:4077293:4080665408066540831062442Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage tail length determinator1e-80301
NC_007963:1552761:1569114156911415717472634Chromohalobacter salexigens DSM 3043, complete genomePhage tail tape measure protein TP901, core region2e-79297
NC_010465:2582080:2582080258208025849952916Yersinia pseudotuberculosis YPIII, complete genomephage tail tape measure protein, TP901 family6e-63243
NC_006322:3418268:3440255344025534447214467Bacillus licheniformis ATCC 14580, complete genomehypothetical protein6e-63243
UCMB5137:140766:1407661407661452534488Bacillus atrophaeus UCMB-5137SPBc2 prophage-derived transglycosylase YomI1e-60235
NC_020272:1311932:1347047134704713515344488Bacillus amyloliquefaciens IT-45, complete genomephage tail like protein4e-60233
NC_014011:1139818:1139818113981811422502433Aminobacterium colombiense DSM 12261 chromosome, complete genomephage tail tape measure protein, TP901 family3e-57224
NC_014328:3434478:3442433344243334446282196Clostridium ljungdahlii ATCC 49587 chromosome, complete genomephage protein5e-57223
NC_014328:303063:3750973750973778622766Clostridium ljungdahlii ATCC 49587 chromosome, complete genomephage-like protein3e-53211
NC_014925:1314570:1322187132218713277755589Staphylococcus pseudintermedius HKU10-03 chromosome, completePhage tail length tape-measure protein8e-53209
NC_009801:995396:1013530101353010149091380Escherichia coli E24377A, complete genomehypothetical protein5e-52206
NC_006270:3418097:3440082344008234438193738Bacillus licheniformis ATCC 14580, complete genomephage tail like protein2e-51204
NC_010674:2817651:2832137283213728351963060Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein2e-51204
NC_009495:2479465:2486428248642824894092982Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein2e-49197
NC_016077:1388775:1402182140218214050312850Acidaminococcus intestini RyC-MR95 chromosome, complete genomephage tail tape measure protein, TP901 family, core region domain-containing protein4e-49197
NC_012563:2566500:2574440257444025774182979Clostridium botulinum A2 str. Kyoto, complete genomephage tail tape measure protein, TP901 family6e-49196
NC_017200:1137639:1144780114478011480313252Bacillus thuringiensis serovar finitimus YBT-020 chromosome,putative phage tail tape measure protein9e-49196
NC_008593:1362218:1372464137246413750132550Clostridium novyi NT, complete genomephage tail tape meausure protein, TP901 family, putative1e-48195
NC_017351:2074000:2082686208268620873684683Staphylococcus aureus subsp. aureus 11819-97 chromosome, completephage tail tape measure protein, TP901 family, core region3e-48194
NC_009706:3291330:3322828332282833266553828Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein5e-48193
NC_011837:3226500:3254330325433032581573828Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-48193
NC_011773:4141765:4150660415066041553094650Bacillus cereus AH820 chromosome, complete genomephage tail tape measure protein, family, core region1e-47192
NC_007795:2034000:2044037204403720486894653Staphylococcus aureus subsp. aureus NCTC 8325, complete genometail length tape measure protein4e-47190
NC_002953:2032278:2038044203804420426934650Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein4e-47190
NC_003923:2053510:2058798205879820634474650Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein4e-47190
NC_021184:4493440:4505833450583345092613429Desulfotomaculum gibsoniae DSM 7213, complete genomephage tail tape measure protein, TP901 family8e-47189
NC_009633:2592000:2600654260065426030352382Alkaliphilus metalliredigens QYMF chromosome, complete genomeTP901 family phage tail tape measure protein2e-46188
NC_015425:1295261:1318682131868213212132532Clostridium botulinum BKT015925 chromosome, complete genomephage tail tape measure protein, TP901 family2e-46187
NC_009697:2558286:2564800256480025701125313Clostridium botulinum A str. ATCC 19397 chromosome, completeTP901 family phage tail tape measure protein2e-46187
NC_018704:176088:2134732134732169463474Amphibacillus xylanus NBRC 15112, complete genomeputative phage tail tape measure protein8e-46186
NC_017351:1564469:1570567157056715767436177Staphylococcus aureus subsp. aureus 11819-97 chromosome, completephage tail tape measure protein, TP901 family, core region2e-44181
NC_017342:1765132:1776015177601517822396225Staphylococcus aureus subsp. aureus TCH60 chromosome, completeTP901 family prophage L54a2e-44181
NC_007795:1466318:1473307147330714795076201Staphylococcus aureus subsp. aureus NCTC 8325, complete genomephage tail tape meausure protein, TP901 family, core region domain protein2e-44181
NC_013450:2047000:2054069205406920602456177Staphylococcus aureus subsp. aureus ED98, complete genomephage tail tape measure protein3e-44181
NC_017337:321155:3510533510533541003048Staphylococcus aureus subsp. aureus ED133 chromosome, completePhage tail length tape-measure protein3e-44181
NC_003923:1533500:1540580154058015467806201Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein3e-44181
NC_002952:1592000:1601251160125116074516201Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein4e-44180
NC_014479:1961692:1966181196618119700593879Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative phage tail tape measure protein4e-44180
NC_009632:1097379:1105870110587011120706201Staphylococcus aureus subsp. aureus JH1 chromosome, completeTP901 family phage tail tape measure protein7e-44179
NC_009487:1097500:1105996110599611121966201Staphylococcus aureus subsp. aureus JH9 chromosome, completeTP901 family phage tail tape measure protein7e-44179
NC_002951:351029:3824233824233886236201Staphylococcus aureus subsp. aureus COL, complete genomeprophage L54a, tail tape meausure protein, TP901 family7e-44179
NC_010516:2676746:2683232268323226885925361Clostridium botulinum B1 str. Okra, complete genomephage related protein8e-44179
NC_007793:1548477:1557369155736915635696201Staphylococcus aureus subsp. aureus USA300, complete genomephiSLT ORF2067-like protein, phage tail tape measure protein9e-44179
NC_010079:1564327:1571316157131615775166201Staphylococcus aureus subsp. aureus USA300_TCH1516, completepossible bacteriophage tail protein9e-44179
NC_002953:998944:1010139101013910163396201Staphylococcus aureus subsp. aureus MSSA476, complete genomehypothetical protein1e-43179
NC_010516:2305110:2316579231657923191942616Clostridium botulinum B1 str. Okra, complete genomephage protein7e-41169
NC_010382:3643288:3651220365122036538952676Lysinibacillus sphaericus C3-41, complete genomephage-related tail protein2e-40168
NC_009674:2985878:2996865299686529997922928Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeTP901 family phage tail tape measure protein3e-39164
NC_020164:1677452:1683022168302216893486327Staphylococcus warneri SG1, complete genomeTP901 family prophage L54a4e-39164
NC_012121:474144:4990024990025011072106Staphylococcus carnosus subsp. carnosus TM300, complete genometruncated phiSLT orf2067-like protein (fragment 1)1e-37159
NC_014633:8500:2036720367220941728Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequencephage tail tape measure protein, TP901 family2e-37158
NC_013791:875224:8792958792958814722178Bacillus pseudofirmus OF4 chromosome, complete genomeTP901 family phage tail tape measure protein3e-37157
NC_013407:529385:5385405385405407322193Methanocaldococcus vulcanius M7, complete genomephage tail tape measure protein, TP901 family1e-36155
NC_014297:1336773:1348451134845113510722622Halalkalicoccus jeotgali B3 chromosome, complete genomephage tail tape measure protein, TP901 family2e-36155
NC_011772:2763863:2771523277152327754163894Bacillus cereus G9842, complete genomephage protein7e-36153
NC_004722:1804788:1844978184497818486253648Bacillus cereus ATCC 14579, complete genomePhage protein1e-34149
NC_009697:3110772:3114511311451131196555145Clostridium botulinum A str. ATCC 19397 chromosome, completeTP901 family phage tail tape measure protein2e-34148
NC_016816:674171:6763646763646784302067Pantoea ananatis LMG 5342, complete genomephage tail tape measure protein1e-33145
NC_019977:1189242:1215510121551012195294020Methanomethylovorans hollandica DSM 15978, complete genomephage tail tape measure protein, TP901 family6e-32140
NC_015636:316994:3279043279043300872184Methanothermococcus okinawensis IH1 chromosome, complete genomephage tail tape measure protein, TP901 family1e-31139
NC_013199:845000:8728418728418777064866Lactobacillus rhamnosus Lc 705, complete genomephage protein, measure9e-29129
NC_010397:235976:2395292395292435123984Mycobacterium abscessus chromosome Chromosome, complete sequencePutative phage tail tape measure protein TMP1e-28129
NC_003212:2413824:2414652241465224194574806Listeria innocua Clip11262, complete genomehypothetical protein2e-26121
NC_010723:2269372:2273340227334022768103471Clostridium botulinum E3 str. Alaska E43, complete genometail tape measure protein5e-26120
NC_010674:2328307:2336799233679923402633465Clostridium botulinum B str. Eklund 17B, complete genometail tape measure protein8e-26119
NC_012984:520000:5400725400725439773906Lactobacillus plantarum JDM1, complete genometape measure protein6e-25116
NC_014915:2963500:2975957297595729797093753Geobacillus sp. Y412MC52 chromosome, complete genometail tape measure protein TP901 core region protein7e-25116
NC_010397:1751067:1794188179418817982014014Mycobacterium abscessus chromosome Chromosome, complete sequenceBacteriophage tape measure protein (TMP)3e-24114
NC_015520:3060495:3071393307139330735612169Mahella australiensis 50-1 BON chromosome, complete genomephage tail tape measure protein, TP901 family9e-23109
NC_015520:55710:7031070310729732664Mahella australiensis 50-1 BON chromosome, complete genomephage tail tape measure protein, TP901 family1e-22109
NC_006322:1507411:1524888152488815301885301Bacillus licheniformis ATCC 14580, complete genomeYqbO5e-22107
NC_006270:1511000:1524027152402715293275301Bacillus licheniformis ATCC 14580, complete genomePhage tail tape measure protein5e-22107
NC_003902:3544743:3545197354519735480672871Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein3e-22107
NC_014624:1235818:1256606125660612605473942Eubacterium limosum KIST612 chromosome, complete genomephage-like protein1e-21105
NC_020064:871338:8827808827808848372058Serratia marcescens FGI94, complete genomephage tail tape measure protein, TP901 family3e-21104
NC_009801:995396:1010333101033310114181086Escherichia coli E24377A, complete genomehypothetical protein1e-20102
NC_013892:3803278:3809899380989938132073309Xenorhabdus bovienii SS-2004 chromosome, complete genometapemeasure protein2e-1999
NC_015519:2489728:2513583251358325145991017Tepidanaerobacter sp. Re1 chromosome, complete genometail tape measure protein TP901 core region1e-1896.3
NC_013216:4404085:4411689441168944161254437Desulfotomaculum acetoxidans DSM 771, complete genomephage tail tape measure protein, TP901 family1e-1895.9
NC_015519:2489728:2510052251005225123642313Tepidanaerobacter sp. Re1 chromosome, complete genometail tape measure protein TP901 core region2e-1895.1
NC_003198:4453457:4476305447630544790852781Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein7e-1893.6
NC_017190:871352:8752458752458810015757Bacillus amyloliquefaciens LL3 chromosome, complete genomephage tail tape measure protein1e-1792.8
NC_014551:865254:8911698911698969255757Bacillus amyloliquefaciens DSM 7, complete genomePhage tail tape measure protein1e-1792.8
NC_006361:1665378:1689491168949116939754485Nocardia farcinica IFM 10152, complete genomeputative phage tail1e-1792.4
NC_013441:1221472:1231714123171412357454032Gordonia bronchialis DSM 43247, complete genomephage tail tape measure protein, TP901 family2e-1792
NC_012880:2480000:2486138248613824883512214Dickeya dadantii Ech703, complete genomehypothetical protein5e-1790.5
NC_016799:198091:1980911980912042646174Corynebacterium diphtheriae 31A chromosome, complete genomeimmunity-specific protein Beta2411e-1689.4
NC_009674:2678932:2687249268724926912894041Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeTP901 family phage tail tape measure protein2e-1688.6
NC_014915:2963500:2980959298095929819931035Geobacillus sp. Y412MC52 chromosome, complete genome5e-1687.4
NC_014652:801653:8216578216578242812625Caldicellulosiruptor hydrothermalis 108 chromosome, completephage tail tape measure protein, tp901 family4e-1687.4
NC_016816:2925459:2947544294754429508883345Pantoea ananatis LMG 5342, complete genomephage tail tape measure protein, TP901 family1e-1585.9
NC_016771:2039195:2043285204328520483005016Bacillus cereus NC7401, complete genomeprophage LambdaBa02, tape measure protein2e-1585.1
NC_011658:2080390:2084480208448020894955016Bacillus cereus AH187 chromosome, complete genomeputative prophage LambdaBa02, tape measure protein2e-1585.1
NC_002662:1418970:1426015142601514309374923Lactococcus lactis subsp. lactis Il1403, complete genomeprophage pi3 protein 147e-1583.6
NC_013656:1549634:1556619155661915615384920Lactococcus lactis subsp. lactis KF147, complete genomephage tail tape measure protein7e-1583.6
NC_015428:1544728:1561197156119715667735577Lactobacillus buchneri NRRL B-30929 chromosome, complete genomephage tail tape measure protein, TP901 family2e-1482
NC_014727:1220869:1231439123143912370275589Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,tape measure protein tmp2e-1481.6
NC_012581:466798:4753574753574796944338Bacillus anthracis str. CDC 684 chromosome, complete genomeputative prophage LambdaBa02, tape measure protein5e-1480.9
NC_014831:8965:3912439124422703147Thermaerobacter marianensis DSM 12885 chromosome, complete genomephage tail tape measure protein, TP901 family5e-1480.9
NC_012659:3724729:3760481376048137633602880Bacillus anthracis str. A0248, complete genome5e-1480.5
NC_007530:3749645:3760581376058137634602880Bacillus anthracis str. 'Ames Ancestor', complete genomeprophage lambdaba02, tape measure protein, putative5e-1480.5
NC_003997:3724702:3760454376045437633332880Bacillus anthracis str. Ames, complete genomeprophage LambdaBa02, tape measure protein, putative5e-1480.5
NC_005945:3747652:3760954376095437638332880Bacillus anthracis str. Sterne, complete genomeprophage LambdaBa02, tape measure protein, putative5e-1480.5
NC_016935:6435549:6461211646121164632922082Paenibacillus mucilaginosus 3016 chromosome, complete genomephage tail tape measure protein, TP901 family3e-1377.8
NC_003030:2023751:2030415203041520358745460Clostridium acetobutylicum ATCC 824, complete genomeUncharacterized phage related protein1e-1276.3
NC_015687:2025345:2032009203200920374685460Clostridium acetobutylicum DSM 1731 chromosome, complete genomephage-like protein1e-1275.9
NC_017295:2022085:2029822202982220352815460Clostridium acetobutylicum EA 2018 chromosome, complete genomehypothetical protein1e-1275.9
NC_010981:1371265:1409371140937114116622292Wolbachia pipientis, complete genomephage tail tape measure protein4e-1171.2
NC_009850:1651410:1658910165891016608141905Arcobacter butzleri RM4018, complete genomephage tail tape measure protein, TP901 family, putative2e-1068.9
NC_012560:3771861:3786701378670137899373237Azotobacter vinelandii DJ, complete genomePhage TMP domain-containing protein2e-1068.6
NC_021150:3771860:3786700378670037899363237Azotobacter vinelandii CA6, complete genomePhage TMP domain-containing protein2e-1068.6
NC_002978:549454:5531525531525551942043Wolbachia endosymbiont of Drosophila melanogaster, complete genomeprophage P2W3, tail tape measure protein1e-0965.9
NC_010981:468465:4795274795274817912265Wolbachia pipientis, complete genomePhage tail tape measure protein4e-0964.3
NC_008726:1533727:1545021154502115492504230Mycobacterium vanbaalenii PYR-1, complete genomephage tail tape measure protein, TP901 family9e-0963.2
NC_009456:998935:1020380102038010221971818Vibrio cholerae O395 chromosome 1, complete sequencephage tail tape measure family protein3e-0861.6
NC_014319:1613611:1618490161849016222153726Leuconostoc gasicomitatum LMG 18811, complete genomeTMP repeat family3e-0861.6
NC_007778:3784104:3789946378994637925222577Rhodopseudomonas palustris HaA2, complete genomePhage tail tape measure protein1e-0759.3
NC_012416:753500:7575847575847597642181Wolbachia sp. wRi, complete genometail tape measure protein1e-0759.3
NC_008563:2909945:2928314292831429301491836Escherichia coli APEC O1, complete genomebacteriophage V tail protein5e-0757.4
NC_007946:2894793:2913287291328729151221836Escherichia coli UTI89, complete genomebacteriophage V tail protein5e-0757.4
NC_014136:329484:3398763398763455095634Leuconostoc kimchii IMSNU11154 chromosome, complete genomeprophage pi3 protein 146e-0757
NC_010674:950276:9619499619499652093261Clostridium botulinum B str. Eklund 17B, complete genomephage tail tape measure protein, family8e-0756.6
NC_014632:1112733:1122927112292711253082382Ilyobacter polytropus DSM 2926 chromosome, complete genomephage tail tape measure protein, TP901 family1e-0656.2
NC_010471:1081590:1089478108947810952915814Leuconostoc citreum KM20, complete genomePhage-related tail protein1e-0655.8
NC_006300:60484:8300783007856522646Mannheimia succiniciproducens MBEL55E, complete genomehypothetical protein2e-0655.5
NC_015674:1605923:1630949163094916328591911Helicobacter bizzozeronii CIII-1, complete genomephage tail tape measure family protein2e-0655.1
NC_009004:2055563:2072866207286620780135148Lactococcus lactis subsp. cremoris MG1363, complete genomephage tail component4e-0654.3
NC_014837:3739408:3755448375544837582222775Pantoea sp. At-9b chromosome, complete genomephage tail tape measure protein, TP901 family7e-0653.5
NC_011094:2115750:2134638213463821365661929Salmonella enterica subsp. enterica serovar Schwarzengrund strtail protein8e-0653.5
NC_019968:1235500:1235717123571712378822166Prevotella dentalis DSM 3688 chromosome 2, complete sequencephage tail tape measure protein, TP901 family9e-0653.1