Pre_GI: BLASTP Hits

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Query: NC_005126:1265071:1300388 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1300388, End: 1300555, Length: 168

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005126:3812054:3858607385860738601121506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-23107
NC_005126:3630459:3636182363618236376871506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-23107
NC_005126:1223042:1239230123923012407351506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-23107
NC_005126:4857500:4863573486357348650781506Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-23107
NC_006513:881120:9107949107949123711578Azoarcus sp. EbN1, complete genometransposase3e-1167.4
AP010958:3853082:3855775385577538573161542Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-1166.6
NC_013353:3853082:3855775385577538573161542Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-1166.6
NC_010067:892729:9173789173789189491572Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-1166.6
NC_013194:102000:1059781059781073751398Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completetransposase IS666e-1166.2
NC_014910:1591003:1595522159552215970361515Alicycliphilus denitrificans BC chromosome, complete genometransposase is661e-1065.5
NC_014910:1912552:1928787192878719303011515Alicycliphilus denitrificans BC chromosome, complete genometransposase is661e-1065.5
NC_015422:3184823:3196333319633331978471515Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS661e-1065.5
NC_015458:3328905:3349658334965833513221665Pusillimonas sp. T7-7 chromosome, complete genometransposase IS661e-1065.1
NC_007298:2769525:277379827737982774025228Dechloromonas aromatica RCB, complete genome3e-1063.9
NC_012792:707864:7092727092727108431572Variovorax paradoxus S110 chromosome 2, complete genometransposase IS663e-1063.9
NC_004851:157675:179624179624180004381Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF33e-1063.5
NC_015222:94847:1150451150451166281584Nitrosomonas sp. AL212 chromosome, complete genometransposase IS664e-1063.2
NC_015222:1203465:1204777120477712063601584Nitrosomonas sp. AL212 chromosome, complete genometransposase IS664e-1063.2
NC_008782:2568027:2609863260986326113771515Acidovorax sp. JS42, complete genometransposase IS665e-1063.2
NC_012791:721813:736524736524737126603Variovorax paradoxus S110 chromosome 1, complete genome1e-0962
NC_018691:1822731:1848848184884818504251578Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein1e-0962
NC_018691:3525430:3540832354083235424091578Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein1e-0962
NC_018691:1322389:1335137133513713367141578Alcanivorax dieselolei B5 chromosome, complete genomeTransposase-like protein1e-0962
NC_016147:2964178:296909429690942970053960Pseudoxanthomonas spadix BD-a59 chromosome, complete genometransposase IS661e-0961.6
NC_015851:181721:183040183040183561522Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposase IS661e-0961.6
NC_015379:908904:9623749623749639091536Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family1e-0961.6
NC_015379:2575000:2597899259789925994341536Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family1e-0961.6
NC_011206:1719000:1731655173165517332921638Acidithiobacillus ferrooxidans ATCC 53993, complete genometransposase IS662e-0961.2
NC_015942:3147514:3150702315070231518921191Acidithiobacillus ferrivorans SS3 chromosome, complete genomeIS66 Orf2 family protein3e-0960.8
NC_011206:1264639:1283728128372812853651638Acidithiobacillus ferrooxidans ATCC 53993, complete genometransposase IS663e-0960.5
NC_007908:1252189:1253824125382412553471524Rhodoferax ferrireducens T118, complete genometransposase IS663e-0960.5
NC_007908:3363902:3382274338227433837971524Rhodoferax ferrireducens T118, complete genometransposase IS663e-0960.5
NC_015458:2614108:2618501261850126200631563Pusillimonas sp. T7-7 chromosome, complete genometransposase4e-0960.1
NC_012660:2045398:2082870208287020844171548Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase4e-0960.1
NC_010501:30000:4031340313418481536Pseudomonas putida W619, complete genometransposase IS668e-0959.3
NC_020209:397376:4306364306364321621527Pseudomonas poae RE*1-1-14, complete genometransposase orf37e-0959.3
NC_002947:4484824:4487111448711144886461536Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf37e-0959.3
NC_002947:4994335:5033959503395950354941536Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf37e-0959.3
NC_017986:2548720:2564881256488125664161536Pseudomonas putida ND6 chromosome, complete genometransposase IS667e-0959.3
NC_017986:4885979:4901735490173549032701536Pseudomonas putida ND6 chromosome, complete genometransposase IS667e-0959.3
NC_002947:4994335:5036907503690750384421536Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf37e-0959.3
NC_002947:6152500:6152929615292961544641536Pseudomonas putida KT2440, complete genomeISPpu14, transposase Orf37e-0959.3
NC_015851:10915:149421494215610669Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposase IS661e-0858.9
NC_020209:47504:100076100076100882807Pseudomonas poae RE*1-1-14, complete genomehypothetical protein1e-0858.9
NC_012660:2684981:2697009269700926985381530Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase1e-0858.9
NC_007005:5500196:551180955118095512489681Pseudomonas syringae pv. syringae B728a, complete genome1e-0858.9
NC_020209:397376:411762411762412121360Pseudomonas poae RE*1-1-14, complete genometransposase component1e-0858.2
NC_008463:5246954:5301889530188953034241536Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transposase1e-0858.2
NC_015733:3736104:3756874375687437584211548Pseudomonas putida S16 chromosome, complete genomeISPpu14, transposase Orf32e-0858.2
NC_015458:2998000:3002485300248530040891605Pusillimonas sp. T7-7 chromosome, complete genometransposase3e-0857.4
NC_016830:2642881:2649127264912726507221596Pseudomonas fluorescens F113 chromosome, complete genomeprotein TnpC33e-0857
NC_016830:3869572:3920434392043439220291596Pseudomonas fluorescens F113 chromosome, complete genometransposase orf33e-0857
NC_016830:952342:9626919626919642861596Pseudomonas fluorescens F113 chromosome, complete genometransposase3e-0857
NC_007951:2233676:2242102224210222437241623Burkholderia xenovorans LB400 chromosome 1, complete sequenceTransposase ISPpu14 orf3 like, IS66 family3e-0857
NC_007951:740500:7548817548817565031623Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase3e-0857
NC_007952:1293024:1306890130689013085121623Burkholderia xenovorans LB400 chromosome 2, complete sequenceTransposase IS66 family3e-0857
NC_012660:5793200:5826185582618558277111527Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase5e-0856.2
NC_002947:4167500:419271841927184192963246Pseudomonas putida KT2440, complete genome6e-0856.2
NC_015379:4630367:4644408464440846460571650Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family8e-0855.8
NC_016626:1592781:1599495159949516011051611Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase IS661e-0755.1
NC_012791:721813:7265337265337280081476Variovorax paradoxus S110 chromosome 1, complete genometransposase IS661e-0755.1
NC_014394:2577949:2599190259919026007191530Gallionella capsiferriformans ES-2 chromosome, complete genometransposase1e-0754.7
NC_009484:857384:8709868709868726471662Acidiphilium cryptum JF-5 chromosome, complete genometransposase IS662e-0754.7
NC_016589:183432:2164502164502180721623Burkholderia sp. YI23 chromosome 1, complete sequencetransposase IS662e-0754.3
NC_009485:584707:6109946109946125771584Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase3e-0753.9
NC_020541:268406:2826722826722842071536Rhodanobacter sp. 2APBS1, complete genometransposase3e-0753.9
NC_011601:3338888:3365174336517433665771404Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf3 of IS6824e-0753.5
NC_013353:3853082:3871286387128638724161131Escherichia coli O103:H2 str. 12009, complete genome4e-0753.5
AP010958:3853082:3871286387128638724161131Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-0753.5
NC_004431:3409389:345297234529723453157186Escherichia coli CFT073, complete genomehypothetical protein4e-0753.5
NC_011751:3453683:347462334746233474808186Escherichia coli UMN026 chromosome, complete genome4e-0753.5
NC_013716:5201097:526867252686725269112441Citrobacter rodentium ICC168, complete genome4e-0753.5
CP002797:4603787:4622390462239046240031614Escherichia coli NA114, complete genomeIS-66 transposase4e-0753.5
NC_013941:3676146:3702425370242537038281404Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein4e-0753.5
AP010958:5090696:5090696509069650919701275Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-0753.5
AP010958:3627355:3654332365433236556061275Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-0753.5
NC_013353:3627355:3654332365433236556061275Escherichia coli O103:H2 str. 12009, complete genome4e-0753.5
NC_013353:5090696:5090696509069650919701275Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-0753.5
NC_002655:3919545:3940813394081339422161404Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc83e-0753.5
NC_002695:3852233:3873500387350038749031404Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-0753.5
NC_011353:3956630:3976582397658239779851404Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-0753.5
NC_013008:3911356:3932623393262339340261404Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-0753.5
NC_015740:4508375:451290945129094513067159Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetransposase6e-0753.1
NC_010660:175200:197172197172197546375Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase family5e-0753.1
NC_014664:1614568:1617135161713516187181584Rhodomicrobium vannielii ATCC 17100 chromosome, complete genometransposase IS666e-0752.8
NC_014664:2669562:2669562266956226711451584Rhodomicrobium vannielii ATCC 17100 chromosome, complete genometransposase IS666e-0752.8
NC_010658:1933605:1949452194945219510051554Shigella boydii CDC 3083-94, complete genomeIS66 family element, transposase6e-0752.8
NC_010658:3622610:3626317362631736279091593Shigella boydii CDC 3083-94, complete genomeIS66 family element, transposase7e-0752.8
NC_010660:33109:3845938459400511593Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, transposase7e-0752.8
NC_009485:8138314:8143322814332281449441623Bradyrhizobium sp. BTAi1 chromosome, complete genometransposase8e-0752.4
NC_011000:1262324:1267953126795312695061554Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase8e-0752.4
NC_011000:3514338:3543104354310435446571554Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase8e-0752.4
NC_010512:1015557:1041531104153110430841554Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetransposase IS668e-0752.4
NC_007946:4779745:481139248113924811577186Escherichia coli UTI89, complete genomehypothetical protein S00728e-0752.4
NC_009485:5171658:5213392521339252150411650Bradyrhizobium sp. BTAi1 chromosome, complete genomeIS66 family insertion sequence transposase protein1e-0652
NC_009445:7220929:7221753722175372233781626Bradyrhizobium sp. ORS 278 chromosome, complete genometransposase1e-0652
NC_007762:88979:1074261074261089911566Rhizobium etli CFN 42 plasmid p42a, complete sequenceprobable insertion sequence transposase protein, IS66 family2e-0651.6
NC_007762:88979:9161691616931811566Rhizobium etli CFN 42 plasmid p42a, complete sequenceputative insertion sequence transposase protein, IS66 family2e-0651.6
NC_017323:689512:6935616935616951261566Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequencetransposase IS662e-0651.6
NC_007626:3522265:3601579360157936031771599Magnetospirillum magneticum AMB-1, complete genomeTransposase and inactivated derivative2e-0651.2
NC_014228:2270000:2294283229428322958541572Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase2e-0651.2
NC_017322:1360764:1373644137364413753261683Sinorhizobium meliloti BL225C chromosome, complete genometransposase IS662e-0651.2
NC_008435:1131242:1137967113796711395531587Rhodopseudomonas palustris BisA53, complete genometransposase IS662e-0651.2
NC_008435:1215437:1290769129076912923551587Rhodopseudomonas palustris BisA53, complete genometransposase IS662e-0651.2
NC_008435:2658986:2674981267498126765671587Rhodopseudomonas palustris BisA53, complete genometransposase IS662e-0651.2
NC_008435:3915110:3930329393032939319151587Rhodopseudomonas palustris BisA53, complete genometransposase IS662e-0651.2
NC_004431:4270305:429409942940994294284186Escherichia coli CFT073, complete genomehypothetical protein3e-0650.8
NC_007762:88979:1099761099761116101635Rhizobium etli CFN 42 plasmid p42a, complete sequenceputative insertion sequence transposase protein, IS66 family3e-0650.8
NC_010505:4990472:500681450068145007362549Methylobacterium radiotolerans JCM 2831, complete genome4e-0650.1
NC_014029:331919:3936873936873952851599Yersinia pestis Z176003 chromosome, complete genomehypothetical protein4e-0650.1
NC_007946:1119000:112688211268821127064183Escherichia coli UTI89, complete genomehypothetical protein5e-0650.1
NC_004431:1211000:121887912188791219061183Escherichia coli CFT073, complete genomehypothetical protein6e-0649.7
NC_011205:1107998:111967911196791119927249Salmonella enterica subsp. enterica serovar Dublin str. CT_020218535e-0649.7
NC_015727:1050500:105297810529781053706729Cupriavidus necator N-1 plasmid BB1p, complete sequencehypothetical protein8e-0648.9
NC_013854:513196:527970527970528875906Azospirillum sp. B510, complete genometransposase1e-0548.9
NC_013857:478000:478854478854479759906Azospirillum sp. B510 plasmid pAB510c, complete sequencetransposase1e-0548.9
NC_013857:478000:481190481190482095906Azospirillum sp. B510 plasmid pAB510c, complete sequencetransposase1e-0548.9
NC_013856:692000:692611692611693516906Azospirillum sp. B510 plasmid pAB510b, complete sequencetransposase1e-0548.9
NC_013860:171235:189144189144190049906Azospirillum sp. B510 plasmid pAB510f, complete sequencetransposase1e-0548.9