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Query: NC_005126:1265071:1271090 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1271090, End: 1272238, Length: 1149

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007952:3196085:3228502322850232296861185Burkholderia xenovorans LB400 chromosome 2, complete sequenceS-mandelate dehydrogenase (MdlB)3e-120432
NC_010623:72500:8190181901831001200Burkholderia phymatum STM815 chromosome 2, complete sequenceL-lactate dehydrogenase (cytochrome)1e-75283
NC_007963:1190847:1214439121443912156381200Chromohalobacter salexigens DSM 3043, complete genome(S)-2-hydroxy-acid oxidase7e-72271
NC_020126:3383902:3387540338754033887631224Myxococcus stipitatus DSM 14675, complete genome(S)-2-hydroxy-acid oxidase9e-69261
NC_010676:2658495:2664906266490626661141209Burkholderia phytofirmans PsJN chromosome 2, complete sequenceL-lactate dehydrogenase (cytochrome)1e-68260
NC_014323:245979:2489332489332501741242Herbaspirillum seropedicae SmR1 chromosome, complete genomeFMN-dependent L-lactate dehydrogenase1e-66253
NC_014306:2518996:2535516253551625367571242Erwinia billingiae Eb661, complete genomeL-lactate dehydrogenase (Cytochrome)1e-65250
NC_015514:3307199:3340787334078733419981212Cellulomonas fimi ATCC 484 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-65250
NC_007880:935670:9382129382129393811170Francisella tularensis subsp. holarctica, complete genomeL-lactate dehydrogenase1e-64247
NC_017186:2252438:2255591225559122568021212Amycolatopsis mediterranei S699 chromosome, complete genomeL-lactate dehydrogenase1e-64246
NC_014318:2252417:2255570225557022567811212Amycolatopsis mediterranei U32 chromosome, complete genomeL-lactate dehydrogenase1e-64246
NC_009749:937412:9399549399549411231170Francisella tularensis subsp. holarctica FTA, complete genomeL-lactate dehydrogenase2e-63243
NC_012590:850130:8725578725578738251269Corynebacterium aurimucosum ATCC 700975, complete genomeL-lactate dehydrogenase1e-63243
NC_009257:963536:9773809773809785221143Francisella tularensis subsp. tularensis WY96-3418 chromosome,L-lactate dehydrogenase4e-63242
NC_013016:1257942:1271346127134612725871242Neisseria meningitidis alpha14 chromosome, complete genomeL-lactate dehydrogenase7e-63241
NC_017517:1377617:1389198138919813903581161Neisseria meningitidis M01-240355 chromosome, complete genomeL-lactate dehydrogenase7e-63241
NC_017516:917817:9255519255519267111161Neisseria meningitidis H44/76 chromosome, complete genomeL-lactate dehydrogenase7e-63241
NC_003116:1488576:1499437149943715006091173Neisseria meningitidis Z2491, complete genomeL-lactate dehydrogenase1e-62240
NC_017505:1338661:1351557135155713527291173Neisseria meningitidis alpha710 chromosome, complete genomeL-lactate dehydrogenase1e-62240
NC_017512:1264542:1275403127540312765751173Neisseria meningitidis WUE 2594, complete genomeL-lactate dehydrogenase (cytochrome)1e-62240
NC_018644:516157:5186995186995198561158Alpha proteobacterium HIMB59 chromosome, complete genomedehydrogenase, FMN-dependent4e-62239
NC_011035:1033942:1045422104542210465941173Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative L-lactate dehydrogenase4e-62238
NC_017511:950411:9612479612479624191173Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeputative L-lactate dehydrogenase4e-62238
NC_008312:3793760:3834377383437738355341158Trichodesmium erythraeum IMS101, complete genomeL-lactate dehydrogenase (cytochrome)1e-61237
NC_002946:618439:6259916259916271631173Neisseria gonorrhoeae FA 1090, complete genomeputative L-lactate dehydrogenase2e-61236
NC_013850:2182337:2182337218233721835211185Klebsiella variicola At-22 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase4e-60232
NC_008314:477722:5187525187525198971146Ralstonia eutropha H16 chromosome 2, complete sequenceL-Lactate cytochrome reductase5e-60231
NC_012917:4646491:4660211466021146613711161Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase2e-59229
NC_012759:3648500:3666176366617636673661191Escherichia coli BW2952 chromosome, complete genomeL-lactate dehydrogenase8e-59228
NC_007606:3755155:3775620377562037768101191Shigella dysenteriae Sd197, complete genomeL-lactate dehydrogenase9e-59227
NC_004337:3590323:3752425375242537536151191Shigella flexneri 2a str. 301, complete genomeL-lactate dehydrogenase1e-58227
NC_004547:138500:1402681402681414281161Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeL-lactate dehydrogenase3e-58226
NC_014311:1309562:1327676132767613288271152Ralstonia solanacearum PSI07 chromosome, complete genomeL-lactate dehydrogenase, FMN-linked4e-58225
NC_012721:137046:1455441455441467071164Burkholderia glumae BGR1 chromosome 2, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase9e-58224
NC_014041:3197192:3206232320623232073831152Zunongwangia profunda SM-A87 chromosome, complete genomeL-lactate dehydrogenase and related alpha-hydroxy acid dehydrogenase9e-58224
NC_018643:1309804:1315929131592913170801152Alpha proteobacterium HIMB5 chromosome, complete genomedehydrogenase, FMN-dependent2e-57223
NC_012660:4734363:4747036474703647481931158Pseudomonas fluorescens SBW25 chromosome, complete genomeL-lactate dehydrogenase2e-55216
NC_010322:5293652:5293652529365252947971146Pseudomonas putida GB-1 chromosome, complete genomeL-lactate dehydrogenase3e-55216
NC_008027:775896:7964437964437975881146Pseudomonas entomophila L48, complete genomeL-lactate dehydrogenase, FMN linked5e-55215
NC_010505:2690939:2704608270460827057531146Methylobacterium radiotolerans JCM 2831, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-54214
NC_015703:3842144:3868489386848938696341146Runella slithyformis DSM 19594 chromosome, complete genomeL-lactate dehydrogenase (cytochrome)3e-54213
NC_006677:1255079:1276029127602912771741146Gluconobacter oxydans 621H, complete genomePutative oxidoreductase6e-54211
NC_020911:3410857:3428035342803534292191185Octadecabacter antarcticus 307, complete genomeL-lactate dehydrogenase LldD1e-53210
NC_010501:734363:7661877661877673321146Pseudomonas putida W619, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase3e-53209
NC_010677:1621500:1657548165754816587051158Francisella tularensis subsp. mediasiatica FSC147, complete genomeL-lactate dehydrogenase9e-53207
NC_020911:3046916:3063151306315130642961146Octadecabacter antarcticus 307, complete genomecytochrome containing L-lactate dehydrogenase LldD3e-50199
NC_008369:939356:942179942179943066888Francisella tularensis subsp. holarctica OSU18, complete genomeL-lactate dehydrogenase (cytochrome)6e-48191
NC_013730:2187898:2194127219412721951761050Spirosoma linguale DSM 74, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase6e-48191
NC_013501:1691532:1709845170984517110351191Rhodothermus marinus DSM 4252, complete genomeLactate 2-monooxygenase7e-46184
NC_008025:669281:6713996713996726701272Deinococcus geothermalis DSM 11300, complete genomeLactate 2-monooxygenase2e-45183
NC_012125:2143246:2169433216943321706381206Salmonella enterica subsp. enterica serovar Paratyphi C strainglycolate oxidase3e-44179
NC_010102:1388344:1414521141452114157231203Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-44179
NC_003198:1378457:1396641139664113978431203Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative glycolate oxidase9e-44177
NC_017187:691769:7003927003927014681077Arcobacter butzleri ED-1, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-43177
NC_007951:2233676:2234389223438922355791191Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative L-lactate dehydrogenase6e-42171
NC_012721:182965:2045582045582056761119Burkholderia glumae BGR1 chromosome 2, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase2e-40166
NC_011205:1633353:1659562165956216606981137Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853L-lactate oxidase5e-40165
NC_012984:3077004:3096118309611830972181101Lactobacillus plantarum JDM1, complete genomelactate oxidase1e-37157
NC_013199:2386924:2393109239310923942241116Lactobacillus rhamnosus Lc 705, complete genomeL-lactate dehydrogenase (FMN-dependent) related alpha-hydroxy acid dehydrogenase3e-36152
NC_020995:2636519:2640621264062126417241104Enterococcus casseliflavus EC20, complete genomeL-lactate oxidase8e-34144
NC_003047:2477810:2483254248325424843481095Sinorhizobium meliloti 1021, complete genomePUTATIVE L-LACTATE DEHYDROGENASE (CYTOCHROME) PROTEIN2e-33143
NC_010999:2483000:2485994248599424871091116Lactobacillus casei, complete genomeNAD-independent L-lactate dehydrogenase3e-33143
NC_007946:4779745:4807909480790948091261218Escherichia coli UTI89, complete genomeputative FMN-dependent dehydrogenase6e-33142
NC_008253:3941938:3966658396665839678871230Escherichia coli 536, complete genomeputative FMN-dependent dehydrogenase9e-33141
NC_015590:2290359:2295803229580322968971095Sinorhizobium meliloti AK83 chromosome 1, complete sequence(S)-2-hydroxy-acid oxidase1e-32140
NC_017322:2191391:2196835219683521979291095Sinorhizobium meliloti BL225C chromosome, complete genome(S)-2-hydroxy-acid oxidase1e-32140
NC_017325:967598:9849539849539860471095Sinorhizobium meliloti SM11 chromosome, complete genome(S)-2-hydroxy-acid oxidase1e-32140
NC_019908:1467000:1487172148717214881851014Brachyspira pilosicoli P43/6/78 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase9e-1994.7
NC_018607:2375344:2394891239489123959041014Brachyspira pilosicoli B2904 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-1894.7
NC_015873:380485:4018204018204028541035Megasphaera elsdenii DSM 20460, complete genomedehydrogenase2e-1893.6
NC_012225:2834642:2840533284053328415461014Brachyspira hyodysenteriae WA1, complete genomeFMN-dependent alpha-hydroxyacid oxidizing enzyme4e-1892.8
NC_008262:2025699:2037558203755820385801023Clostridium perfringens SM101, complete genomehydroxyacid oxidase 21e-1791.3
NC_003366:2143173:2153614215361421546361023Clostridium perfringens str. 13, complete genomeprobable glycolate oxidase1e-1790.9
NC_013173:2261396:2269518226951822705341017Desulfomicrobium baculatum DSM 4028, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-1790.9
NC_013947:1570000:1585569158556915865971029Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase2e-1790.1
NC_014150:2617072:2623245262324526242581014Brachyspira murdochii DSM 12563 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase2e-1790.1
NC_018866:1279000:127900012790001279929930Dehalobacter sp. DCA chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase3e-1583.2
NC_018867:1357540:135754013575401358469930Dehalobacter sp. CF chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase3e-1583.2
NC_013385:1064188:1086930108693010879491020Ammonifex degensii KC4, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase1e-1480.9
NC_015565:2027279:2078924207892420799431020Desulfotomaculum carboxydivorans CO-1-SRB chromosome, complete(S)-2-hydroxy-acid oxidase4e-1479.3
NC_012658:3387774:3395422339542233964351014Clostridium botulinum Ba4 str. 657 chromosome, complete genomedehydrogenase3e-1376.6
NC_009495:3309550:3317028331702833180411014Clostridium botulinum A str. ATCC 3502 chromosome, complete genomedehydrogenase, FMN-dependent3e-1376.6
NC_009697:3291500:3293017329301732940301014Clostridium botulinum A str. ATCC 19397 chromosome, completedehydrogenase, FMN-dependent3e-1376.6
NC_010516:3368951:3377658337765833786711014Clostridium botulinum B1 str. Okra, complete genomedehydrogenase, FMN-dependent3e-1376.3
NC_012563:3556763:3559159355915935601721014Clostridium botulinum A2 str. Kyoto, complete genomedehydrogenase, FMN-dependent3e-1376.3
NC_009698:3185359:3190124319012431911371014Clostridium botulinum A str. Hall chromosome, complete genomedehydrogenase, FMN-dependent4e-1375.9
NC_014328:3747973:3754411375441137554271017Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative FMN-dependent alpha-hydroxy acid dehydrogenase2e-1273.9
NC_015589:2878000:2894051289405128950731023Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeFMN-dependent alpha-hydroxy acid dehydrogenase7e-1065.5