Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:138500 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1386131400521440aldehyde dehydrogenase AQuickGO ontologyBLASTP
1402681414281161L-lactate dehydrogenaseQuickGO ontologyBLASTP
1414491427651317hypothetical proteinBLASTP
142830143192363hypothetical proteinBLASTP
143224143610387hypothetical proteinBLASTP
143719144270552putative lipoproteinQuickGO ontologyBLASTP
144322144879558putative lipoproteinQuickGO ontologyBLASTP
144970145197228hypothetical proteinBLASTP
145496145804309hypothetical proteinBLASTP
1458011470511251hypothetical proteinBLASTP
147194147496303hypothetical proteinBLASTP
1488111503911581putative deoxycytidylate deaminaseQuickGO ontologyBLASTP
150683151546864hypothetical proteinBLASTP
151645152553909LysR-family transcriptional regulatorQuickGO ontologyBLASTP
152758153705948L-asparaginaseQuickGO ontologyBLASTP
153765154586822hypothetical proteinBLASTP
1545891556711083putative peptidaseQuickGO ontologyBLASTP
155680156579900ABC transporter permease proteinQuickGO ontologyBLASTP
156588157508921ABC transporter permease proteinQuickGO ontologyBLASTP
1575271590681542ABC transporter periplasmic binding proteinQuickGO ontologyBLASTP