Pre_GI Gene

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Host: NC_012125 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:2143246 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
214324621471483903ATP-dependent RNA helicase HrpAQuickGO ontologyBLASTP
21472122148012801hypothetical proteinBLASTP
21481292148659531cytochrome b561QuickGO ontologyBLASTP
21489302149592663SAM-dependent methyltransferaseQuickGO ontologyBLASTP
21517422152422681amino acid ABC transporterQuickGO ontologyBLASTP
21524192153150732polar amino acid ABC transporter ATPaseQuickGO ontologyBLASTP
21531752153822648amino acid ABC transporter permeaseQuickGO ontologyBLASTP
21538292154590762periplasmic amino acid-binding proteinQuickGO ontologyBLASTP
21554972155841345hypothetical proteinBLASTP
215596221571881227effector proteinQuickGO ontologyBLASTP
21584582158859402dipicolinate reductaseQuickGO ontologyBLASTP
21593822159657276cytoplasmic proteinQuickGO ontologyBLASTP
215968921608071119alcohol dehydrogenaseQuickGO ontologyBLASTP
216099421626011608methyl-accepting chemotaxis protein IIIQuickGO ontologyBLASTP
21626622163585924transcriptional regulatorQuickGO ontologyBLASTP
216382721652211395cytoplasmic proteinQuickGO ontologyBLASTP
216527021667781509esteraseQuickGO ontologyBLASTP
216702821686531626glucan biosynthesis protein DQuickGO ontologyBLASTP
21688492169424576hypothetical proteinBLASTP
216943321706381206glycolate oxidaseQuickGO ontologyBLASTP