Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_012581: Bacillus anthracis str. CDC 684 chromosome, complete genome

NCBI: NC_012581

Host Lineage: Bacillus anthracis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism was the first to be shown to cause disease by Dr. Robert Koch, leading to the formulation of Koch's postulates, which were verified by Dr. Louis Pasteur (the organism, isolated from sick animals, was grown in the laboratory and then used to infect healthy animals and make them sick). This organism was also the first for which an attenuated strain was developed as a vaccine. Herbivorous animals become infected with the organism when they ingest spores from the soil whereas humans become infected when they come into contact with a contaminated animal. Anthrax is not transmitted due to person-to-person contact. The three forms of the disease reflect the sites of infection which include cutaneous (skin), pulmonary (lung), and intestinal. Pulmonary and intestinal infections are often fatal if left untreated. Spores are taken up by macrophages and become internalized into phagolysozomes (membranous compartment) whereupon germination initiates. Bacteria are released into the bloodstream once the infected macrophage lyses whereupon they rapidly multiply, spreading throughout the circulatory and lymphatic systems, a process that results in septic shock, respiratory distress and organ failure. The spores of this pathogen have been used as a terror weapon.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
146679848597019173Island text3.0143523.851543.3911Neighbours21BLASTN+IslandViewer 466798.gbk
2519969*54009920131Island text2.6488626.542740.3757Neighbours21BLASTN519969.gbk
3559182*61109751916Island text2.7945325.495537.3595Neighbours21BLASTN559182.gbk
4639329*65748618158Island text1.9405721.090738.3482Neighbours21BLASTN639329.gbk
5709234*73232023087Island text1.9304822.972833.4704Neighbours21BLASTN+709234.gbk
675598277811222131Island text1.8527821.334534.2475Neighbours21BLASTN+IslandViewer 755982.gbk
780345682809924644Island text2.3197621.26731.5812Neighbours21BLASTN803456.gbk
889795792033822382Island text1.9460820.190936.929Neighbours21BLASTN+897957.gbk
91075663109860922947Island text1.8765921.054232.1233Neighbours21BLASTN+1075663.gbk
101505276152494219667Island text1.8564926.530235.7993Neighbours21BLASTN+1505276.gbk
112178000*220059822599Island text2.2401320.133133.2623Neighbours21BLASTN+IslandViewer 2178000.gbk
122885519290837722859Island text1.7033219.385334.7363Neighbours21BLASTN2885519.gbk
134118366*413784219477Island text1.6961222.543829.6001Neighbours21BLASTN4118366.gbk
144478036*450061222577Island text2.3559620.090640.7662Neighbours21BLASTN4478036.gbk
154509491*453478525295Island text1.4272122.963340.2668Neighbours21BLASTN4509491.gbk
164856620*487525418635Island text2.0581227.711844.8623Neighbours21BLASTN+IslandViewer 4856620.gbk
174882525*492072638202Island text3.3031630.18651.4082Neighbours21BLASTN+4882525.gbk
185008749503340224654Island text1.5181122.112134.1028Neighbours21BLASTN+5008749.gbk
195052000*507474322744Island text1.6739222.577642.0811Neighbours21BLASTN5052000.gbk
205085915*510609920185Island text1.6004225.010941.3105Neighbours21BLASTN+5085915.gbk