Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4461207 Kineococcus radiotolerans SRS30216, complete genome

Start: 4461207, End: 4462397, Length: 1191

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013521:2193203:2196804219680421980241221Sanguibacter keddieii DSM 10542, complete genomesignal transduction histidine kinase2e-39163
NC_009664:4347718:4349218434921843505791362Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase7e-26118
NC_009921:3854969:3885817388581738870341218Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase8e-24111
NC_010162:7620000:7628585762858576297421158Sorangium cellulosum 'So ce 56', complete genomeputative two-component system sensor kinase6e-22105
NC_013235:593289:6067186067186078661149Nakamurella multipartita DSM 44233, complete genomehistidine kinase7e-22105
NC_013595:606096:6196566196566207741119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase3e-2099.8
NC_013131:8029621:8051812805181280530111200Catenulispora acidiphila DSM 44928, complete genomehistidine kinase9e-2098.2
NC_009921:8648994:8669977866997786714671491Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1997.1
NC_010572:4585500:4598066459806645993851320Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system sensor kinase1e-1894.7
NC_013169:1759900:1776071177607117774201350Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase3e-1893.2
NC_017317:51428:5721457214582241011Corynebacterium ulcerans 809 chromosome, complete genomeoxygen sensor histidine kinase4e-1892.8
NC_016111:2257166:2259667225966722609771311Streptomyces cattleya NRRL 8057, complete genometwo-component system sensor kinase5e-1892.4
NC_017955:2494640:2513712251371225148511140Modestobacter marinus, complete genometwo component integral membrane sensor signal transduction histidine kinase8e-1891.7
NC_015957:8569721:8590806859080685921791374Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase3e-1790.1
NC_013169:612456:6148136148136161291317Kytococcus sedentarius DSM 20547, complete genomehistidine kinase3e-1789.7
NC_016582:6811273:6815992681599268171731182Streptomyces bingchenggensis BCW-1 chromosome, complete genomehistidine kinase5e-1789.4
NC_003888:7866148:7876048787604878772411194Streptomyces coelicolor A3(2), complete genomeprobable two-component system sensor kinase5e-1789.4
NC_017218:1166844:1186511118651111889672457Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomehistidine kinase6e-1789
NC_012669:96966:1108371108371120181182Beutenbergia cavernae DSM 12333, complete genomehistidine kinase6e-1789
NC_016114:4333390:4341936434193643432521317Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region5e-1789
NC_016943:1314500:1329748132974813308811134Blastococcus saxobsidens DD2, complete genomeTwo component signal transduction histidine kinase1e-1687.8
NC_014210:2597000:2616442261644226179321491Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase2e-1687
NC_018868:1271742:1274986127498612762121227Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehistidine kinase2e-1687
NC_015953:4746983:4769152476915247703781227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase3e-1686.7
NC_014210:5752651:5758783575878357599311149Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase3e-1686.3
NC_013929:1584906:1603147160314716041541008Streptomyces scabiei 87.22 chromosome, complete genometwo component sensor kinase8e-1685.1
NC_013757:2046000:2057159205715920583281170Geodermatophilus obscurus DSM 43160, complete genomehistidine kinase dimerization and phosphoacceptor region1e-1584.7
NC_015953:6212366:6240356624035662415821227Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-1584.7
NC_013929:6008072:6016109601610960174521344Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase1e-1584.7
NC_011593:1830500:1846652184665218490302379Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,integral membrane sensor signal transduction histidine kinase1e-1584.3
NC_017219:1830353:1846433184643318488202388Bifidobacterium longum subsp. infantis ATCC 15697, complete genometwo-component sensor kinase1e-1584.3
NC_013729:4835452:4840812484081248419781167Kribbella flavida DSM 17836, complete genomehistidine kinase2e-1583.6
NC_021177:5697210:5720678572067857218771200Streptomyces fulvissimus DSM 40593, complete genomeSensor-histidine kinase4e-1582.8
NC_015953:2059083:2077758207775820791791422Streptomyces sp. SirexAA-E chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase4e-1582.8
NC_009921:4399000:4412349441234944136831335Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase7e-1582
NC_003888:4031299:4032042403204240333671326Streptomyces coelicolor A3(2), complete genometwo-component system sensor kinase8e-1581.6
NC_016582:6811273:6826277682627768277011425Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase1e-1481.3
NC_018750:3741581:3758691375869137598181128Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase1e-1480.9
NC_013739:717352:7210357210357221741140Conexibacter woesei DSM 14684, complete genomeintegral membrane sensor signal transduction histidine kinase2e-1480.5
NC_017955:3731480:3744254374425437455401287Modestobacter marinus, complete genometwo-component integral membrane sensor signal transduction histidine kinase5e-1479.3
NC_013947:656140:6795396795396806811143Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase5e-1479
NC_009921:3999040:4016718401671840180551338Frankia sp. EAN1pec, complete genomeintegral membrane sensor signal transduction histidine kinase8e-1478.6
NC_019673:1988853:2012554201255420136751122Saccharothrix espanaensis DSM 44229 complete genomeputative histidine kinase2e-1377
NC_010407:2406113:2421488242148824229241437Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative two-component system sensor kinase2e-1377
NC_008148:1567703:1570582157058215718051224Rubrobacter xylanophilus DSM 9941, complete genomeperiplasmic sensor signal transduction histidine kinase2e-1377
NC_021177:2185898:2204422220442222057951374Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane sensor signal transduction histidine kinase3e-1376.6
NC_014210:2372813:2394666239466623958471182Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane sensor signal transduction histidine kinase3e-1376.6
NC_011886:4336417:4361861436186143632371377Arthrobacter chlorophenolicus A6, complete genomehistidine kinase3e-1376.3
NC_008596:2873675:2875590287559028767471158Mycobacterium smegmatis str. MC2 155, complete genomesensor kinase6e-1375.5
NC_009953:1831000:1831031183103118323081278Salinispora arenicola CNS-205 chromosome, complete genomehistidine kinase9e-1375.1
NC_013947:656140:6593696593696605801212Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase9e-1375.1
NC_015514:3911655:3936688393668839379621275Cellulomonas fimi ATCC 484 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase9e-1375.1
NC_015957:5310000:5318013531801353192151203Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase1e-1274.3
NC_003888:4523500:4536527453652745378971371Streptomyces coelicolor A3(2), complete genometwo-component sensor kinase1e-1274.3
NC_008699:1067855:1070611107061110717891179Nocardioides sp. JS614, complete genomehistidine kinase, dimerisation and phosphoacceptor region3e-1273.2
NC_013169:2423863:2453428245342824546421215Kytococcus sedentarius DSM 20547, complete genomesignal transduction histidine kinase4e-1272.8
NC_014391:3445672:3461080346108034622341155Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehistidine kinase dimerization and phosphoacceptor region7e-1272
NC_016109:5543112:5559633555963355608381206Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase1e-1171.6
NC_016109:3591401:3591401359140135925191119Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase1e-1171.6
NC_013595:5176000:5197494519749451986931200Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-1171.2
NC_018524:4848154:4871272487127248725011230Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase family protein1e-1171.2
NC_009380:4729340:4748874474887447500971224Salinispora tropica CNB-440 chromosome, complete genomehistidine kinase, dimerisation and phosphoacceptor region1e-1171.2
NC_019771:1356000:1365602136560213715925991Anabaena cylindrica PCC 7122, complete genomemulti-sensor signal transduction multi-kinase3e-1169.7
NC_014550:1581812:1616675161667516179071233Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase4e-1169.7
NC_017219:538864:5519915519915533161326Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative two-component sensor kinase4e-1169.3
NC_011593:533884:5521985521985535231326Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,histidine kinase, dimerisation and phosphoacceptor region4e-1169.3
NC_003272:2560329:2564524256452425673582835Nostoc sp. PCC 7120, complete genometwo-component sensor histidine kinase5e-1168.9
NC_018750:5399316:5414659541465954158551197Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase7e-1168.6
NC_018750:6237875:6251329625132962524501122Streptomyces venezuelae ATCC 10712, complete genomeputative two-component system sensor kinase1e-1068.2
NC_013595:196493:1988221988222000961275Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-1067.8
NC_016582:5987039:5993878599387859950801203Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative two-component system sensor kinase1e-0964.7
NC_014960:1697818:1729807172980717309401134Anaerolinea thermophila UNI-1, complete genometwo-component sensor histidine kinase1e-0964.3
NC_016113:11500:3003030030312051176Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencesensor kinase1e-0964.3
NC_013595:1851226:1862814186281418639681155Streptosporangium roseum DSM 43021, complete genomeHistidine kinase2e-0963.9
NC_014650:2417509:2432451243245124335571107Geobacillus sp. Y4.1MC1 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0963.5
NC_016801:394400:4055124055124067381227Corynebacterium diphtheriae C7 (beta) chromosome, complete genometwo-component system sensor histidine kinase4e-0962.8
NC_018524:4988810:5020000502000050210461047Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehistidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein5e-0962.8
NC_016047:3599095:3604688360468836058451158Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completesensor protein DegS1e-0861.6
NC_019896:577594:5784635784635796201158Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeTwo component sensor kinase1e-0861.2
NC_017195:3426000:3444297344429734454541158Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completesensor protein DegS1e-0861.2
NC_018750:6132619:615809461580946159080987Streptomyces venezuelae ATCC 10712, complete genometwo-component sensor histidine kinase2e-0860.5
NC_017191:183500:2050982050982062281131Bacillus amyloliquefaciens XH7 chromosome, complete genomesensory transduction protein kinase4e-0859.3
NC_017188:177500:1991881991882003181131Bacillus amyloliquefaciens TA208 chromosome, complete genomeSensor histidine kinase4e-0859.3
NC_013207:19154:291672916729838672Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446histidine kinase5e-0859.3
NC_010725:4035397:4074774407477440761921419Methylobacterium populi BJ001, complete genomeintegral membrane sensor signal transduction histidine kinase5e-0859.3
NC_016943:3270308:3319588331958833208951308Blastococcus saxobsidens DD2, complete genomeputative two-component system sensor kinase (modular protein)6e-0858.9
NC_007005:2191500:2214084221408422152681185Pseudomonas syringae pv. syringae B728a, complete genomeATP-binding region, ATPase-like:Histidine kinase9e-0858.5
NC_009328:448224:4936944936944947191026Geobacillus thermodenitrificans NG80-2 chromosome, complete genometwo-component sensor histidine kinase8e-0858.5
NC_020995:2255521:2256907225690722579741068Enterococcus casseliflavus EC20, complete genometwo-component system sensor histidine kinase8e-0858.5
NC_016631:4423658:4435012443501244380293018Granulicella mallensis MP5ACTX8 chromosome, complete genomehistidine kinase7e-0858.5
NC_013929:1119384:1127261112726111284631203Streptomyces scabiei 87.22 chromosome, complete genometwo-component system sensor kinase7e-0858.5
NC_006177:520055:5342435342435361441902Symbiobacterium thermophilum IAM 14863, complete genometwo-component sensor histidine kinase1e-0758.2
NC_012581:5085915:5085915508591550870451131Bacillus anthracis str. CDC 684 chromosome, complete genomesensor histidine kinase1e-0758.2
NC_013235:508585:5288685288685305411674Nakamurella multipartita DSM 44233, complete genomehistidine kinase1e-0758.2
NC_021066:4177217:4177217417721741787191503Raoultella ornithinolytica B6, complete genomesensory histidine kinase UhpB1e-0757.8
NC_006270:4149004:4149004414900441501461143Bacillus licheniformis ATCC 14580, complete genomeHypothetical ATP-binding region, ATPase-like1e-0757.8
NC_015957:6859259:6869496686949668707371242Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative signal transduction histidine kinase1e-0757.8
NC_009767:5464796:5465677546567754677252049Roseiflexus castenholzii DSM 13941, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0757.8
NC_016887:3255500:3257326325732632591371812Nocardia cyriacigeorgica GUH-2, complete genomeTwo-component system sensor kinase2e-0757.4
NC_013406:3400114:3417485341748534186991215Paenibacillus sp. Y412MC10 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0757.4
NC_011662:535613:5367005367005380941395Thauera sp. MZ1T, complete genomemulti-sensor signal transduction histidine kinase2e-0757.4
NC_007795:1922000:1973581197358119746241044Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehistidine kinase, putative2e-0757.4
NC_014551:199500:2212092212092223211113Bacillus amyloliquefaciens DSM 7, complete genomeSensor histidine kinase2e-0757.4
NC_017190:182449:2040002040002051121113Bacillus amyloliquefaciens LL3 chromosome, complete genomeSensor histidine kinase2e-0757.4
NC_007204:696972:7178647178647199872124Psychrobacter arcticus 273-4, complete genomesignal transduction histidine kinase sensor2e-0757.4
NC_009664:4423829:4492004449200444931791176Kineococcus radiotolerans SRS30216, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0757.4
NC_020272:3706722:3708448370844837095781131Bacillus amyloliquefaciens IT-45, complete genomesensor signal transduction histidine kinase2e-0757.4
NC_010572:188500:2099672099672111511185Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative two-component system sensor kinase2e-0757.4
NC_011772:5222917:5225308522530852264381131Bacillus cereus G9842, complete genomesensor histidine kinase3e-0757
NC_020410:198000:2198972198972210271131Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeSensory transduction protein kinase3e-0756.6
NC_009725:200071:2206612206612217911131Bacillus amyloliquefaciens FZB42, complete genomesensory transduction protein kinase3e-0756.6
NC_014209:1487699:1504499150449915056651167Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,DegS sensor signal transduction histidine kinase4e-0756.2
NC_011601:4096427:4148861414886141503631503Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomesensory histidine kinase UhpB4e-0756.2
NC_013947:1956923:1976270197627019774211152Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehistidine kinase4e-0756.2
NC_004337:3590323:3901294390129439027961503Shigella flexneri 2a str. 301, complete genomesensor histidine protein kinase, phosphorylates UhpA6e-0755.5
NC_014643:195948:2141092141092153351227Rothia dentocariosa ATCC 17931 chromosome, complete genomesensor histidine kinase7e-0755.5
NC_014837:3126543:3147397314739731490821686Pantoea sp. At-9b chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase7e-0755.5
NC_015761:2444833:2459617245961724613171701Salmonella bongori NCTC 12419, complete genomenitrate/nitrite sensor protein NarQ8e-0755.5
NC_019897:4014485:4039610403961040407611152Thermobacillus composti KWC4 chromosome, complete genomehistidine kinase1e-0654.7
NC_016935:1868839:1909331190933119105571227Paenibacillus mucilaginosus 3016 chromosome, complete genomehistidine kinase1e-0654.3
NC_010571:2041277:2067947206794720691041158Opitutus terrae PB90-1, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0654.3
NC_015389:175406:1914601914601926651206Coriobacterium glomerans PW2 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase2e-0653.9
NC_006322:4149500:414955741495574150261705Bacillus licheniformis ATCC 14580, complete genomeYvfT4e-0653.1
NC_013093:2633000:2668343266834326693741032Actinosynnema mirum DSM 43827, complete genomehistidine kinase3e-0653.1
NC_006905:3913988:3928719392871939302601542Salmonella enterica subsp. enterica serovar Choleraesuis strsensory histidine kinase in two-component regulatory sytem with UhpA4e-0652.8
NC_011149:3895921:3913564391356439150661503Salmonella enterica subsp. enterica serovar Agona str. SL483,sensor histidine kinase UhpB5e-0652.8
NC_012125:3905782:3923510392351039250121503Salmonella enterica subsp. enterica serovar Paratyphi C strainsensory histidine kinase UhpB5e-0652.8
NC_016935:7426389:7434146743414674359631818Paenibacillus mucilaginosus 3016 chromosome, complete genomeLuxR family two component transcriptional regulator6e-0652.4
NC_011094:3853036:3870764387076438722661503Salmonella enterica subsp. enterica serovar Schwarzengrund strsensory histidine kinase UhpB6e-0652.4
NC_011083:3985618:4003261400326140047631503Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,sensor histidine kinase UhpB5e-0652.4
NC_003197:3971905:3989052398905239905541503Salmonella typhimurium LT2, complete genomesensory histidine kinase5e-0652.4
NC_016810:3993863:4010364401036440118661503Salmonella enterica subsp. enterica serovar Typhimurium strtwo-component system sensor histidine kinase5e-0652.4
NC_016856:3985597:4002744400274440042461503Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Ssensory histidine kinase UhpB5e-0652.4
NC_016857:3993864:4010365401036540118671503Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74sensory histidine kinase UhpB5e-0652.4
NC_016860:4055117:4094163409416340956651503Salmonella enterica subsp. enterica serovar Typhimurium strsensor kinase UhpB5e-0652.4
NC_016863:3933848:3950351395035139518531503Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1sensory histidine kinase UhpB5e-0652.4
NC_017046:3991551:4009192400919240106941503Salmonella enterica subsp. enterica serovar Typhimurium str. 798two-component system sensor histidine kinase5e-0652.4
NC_006511:3759550:3777184377718437786741491Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC5e-0652.4
NC_016935:7426389:7438666743866674404591794Paenibacillus mucilaginosus 3016 chromosome, complete genomeresponse regulator7e-0652
NC_011080:3941909:3959636395963639611381503Salmonella enterica subsp. enterica serovar Newport str. SL254,sensor protein UhpB7e-0652
NC_013595:3541012:3541674354167435427921119Streptosporangium roseum DSM 43021, complete genomeputative two-component system sensor kinase8e-0652