Pre_GI: BLASTP Hits

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Query: NC_009512:4375452:4377763 Pseudomonas putida F1, complete genome

Start: 4377763, End: 4378464, Length: 702

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017986:1128879:113435911343591135060702Pseudomonas putida ND6 chromosome, complete genomeorotidine 5'-phosphate decarboxylase4e-122437
NC_016830:4914406:493418949341894934923735Pseudomonas fluorescens F113 chromosome, complete genomeprotein PyrF4e-110397
NC_018868:569423:573484573484574122639Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeorotidine 5'-phosphate decarboxylase3e-61234
NC_015731:447411:469767469767470465699Nitrosomonas sp. Is79A3 chromosome, complete genomeorotidine 5'-phosphate decarboxylase6e-61233
NC_014752:1530000:154607415460741546805732Neisseria lactamica ST-640, complete genomeorotidine 5'-phosphate decarboxylase2e-59229
NC_003112:844000:847089847089847829741Neisseria meningitidis MC58, complete genomeorotidine 5'-phosphate decarboxylase1e-59229
NC_017512:760000:763798763798764538741Neisseria meningitidis WUE 2594, complete genomeorotidine 5'-phosphate decarboxylase (OMP decarboxylase; OMPDCase; OMPdecase)1e-59229
NC_017515:1429317:144524914452491445989741Neisseria meningitidis M04-240196 chromosome, complete genomeorotidine 5'-phosphate decarboxylase1e-59229
NC_017516:1439775:145622114562211456961741Neisseria meningitidis H44/76 chromosome, complete genomeorotidine 5'-phosphate decarboxylase1e-59229
NC_003116:988000:992983992983993723741Neisseria meningitidis Z2491, complete genomeorotidine 5'-phosphate decarboxylase1e-59229
NC_010120:788000:792261792261793001741Neisseria meningitidis 053442, complete genomeorotidine 5'-phosphate decarboxylase1e-59229
NC_017517:867595:872612872612873352741Neisseria meningitidis M01-240355 chromosome, complete genomeorotidine 5'-phosphate decarboxylase8e-60229
NC_017514:1396000:141036814103681411108741Neisseria meningitidis M01-240149 chromosome, complete genomeorotidine 5'-phosphate decarboxylase9e-59226
NC_017505:841496:846661846661847401741Neisseria meningitidis alpha710 chromosome, complete genomeputative orotidine 5'-phosphate decarboxylase9e-59226
NC_020063:2480983:250493625049362505673738Enterobacteriaceae bacterium strain FGI 57, complete genomeorotidine-5'-phosphate decarboxylase3e-58224
NC_014926:165312:178005178005178712708Thermovibrio ammonificans HB-1 chromosome, complete genomeorotidine 5'-phosphate decarboxylase4e-49194
NC_011830:4234392:426127242612724262000729Desulfitobacterium hafniense DCB-2, complete genomeorotidine 5'-phosphate decarboxylase2e-47189
NC_007907:3230513:325153232515323252260729Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-47187
NC_019903:2806466:281116528111652811893729Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,orotidine-5'-phosphate decarboxylase5e-47187
NC_015519:2526047:255724125572412557936696Tepidanaerobacter sp. Re1 chromosome, complete genomeorotidine 5'-phosphate decarboxylase5e-47187
NC_018515:3959681:396520139652013965935735Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeorotidine-5'-phosphate decarboxylase2e-44179
NC_016584:4961688:497027949702794970989711Desulfosporosinus orientis DSM 765 chromosome, complete genomeorotidine 5''-phosphate decarboxylase, subfamily 16e-43174
NC_014633:583858:594721594721595446726Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceorotidine 5'-phosphate decarboxylase1e-42173
NC_011979:2641500:264447426444742645193720Geobacter sp. FRC-32, complete genomeorotidine 5'-phosphate decarboxylase2e-42172
NC_002939:1601706:160170616017061602425720Geobacter sulfurreducens PCA, complete genomeorotidine 5`-phosphate decarboxylase4e-42171
NC_010424:1356000:137493013749301375679750Candidatus Desulforudis audaxviator MP104C, complete genomeorotidine 5'-phosphate decarboxylase8e-42170
NC_015437:1066014:107168710716871072406720Selenomonas sputigena ATCC 35185 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-41169
NC_014973:3290545:331191133119113312633723Geobacter sp. M18 chromosome, complete genomeorotidine 5'-phosphate decarboxylase3e-41168
NC_007517:1515493:151723315172331517952720Geobacter metallireducens GS-15, complete genomeOrotidine 5'-phosphate decarboxylase3e-41168
NC_017068:1732857:174757517475751748291717Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative orotidine 5'-phosphate decarboxylase3e-41168
NC_009089:4177117:419804241980424198758717Clostridium difficile 630, complete genomeorotidine 5'-phosphate decarboxylase2e-40166
NC_003212:1958500:196162019616201962321702Listeria innocua Clip11262, complete genomepyrF1e-40166
NC_017179:3984000:400359740035974004313717Clostridium difficile BI1, complete genomeorotidine 5'-phosphate decarboxylase4e-40164
NC_013315:3978495:399557739955773996293717Clostridium difficile CD196 chromosome, complete genomeorotidine 5'-phosphate decarboxylase4e-40164
NC_016011:1910638:191474019147401915441702Listeria ivanovii subsp. ivanovii PAM 55, complete genomeputative orotidine 5'-phosphate decarboxylase3e-39161
NC_002973:1877905:188659318865931887294702Listeria monocytogenes str. 4b F2365, complete genomeorotidine 5'-phosphate decarboxylase5e-39160
NC_013891:1861294:186539718653971866098702Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeorotidine 5'-phosphate decarboxylase1e-38159
NC_011660:724711:736303736303737004702Listeria monocytogenes HCC23 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-38158
NC_010718:2977021:298180329818032982636834Natranaerobius thermophilus JW/NM-WN-LF, complete genomeorotidine 5'-phosphate decarboxylase4e-38158
NC_013517:2815482:283047728304772831184708Sebaldella termitidis ATCC 33386, complete genomeorotidine 5'-phosphate decarboxylase7e-38157
NC_003210:1904152:190721819072181907919702Listeria monocytogenes EGD-e, complete genomehypothetical protein4e-38157
NC_013768:1983711:199240019924001993101702Listeria monocytogenes 08-5923, complete genomehypothetical protein4e-38157
NC_007350:1629694:163497416349741635666693Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305,orotidine-5-phosphate decarboxylase1e-37156
NC_006274:3773335:378053237805323781248717Bacillus cereus E33L, complete genomeorotidine 5'-phosphate decarboxylase3e-37155
NC_014335:3645500:365084936508493651565717Bacillus cereus biovar anthracis str. CI chromosome, completeorotidine 5'-phosphate decarboxylase3e-37155
NC_011773:3729500:373488237348823735598717Bacillus cereus AH820 chromosome, complete genomeorotidine 5'-phosphate decarboxylase3e-37155
NC_009674:2624817:263118726311872631903717Bacillus cytotoxicus NVH 391-98 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_006833:1011537:104218810421881042865678Wolbachia endosymbiont strain TRS of Brugia malayi, completeOrotidine-5'-phosphate decarboxylase2e-37155
NC_010184:3757000:376016437601643760880717Bacillus weihenstephanensis KBAB4, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_004722:3855326:386225438622543862970717Bacillus cereus ATCC 14579, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_011725:3897450:390430839043083905024717Bacillus cereus B4264 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_014171:3779956:378512837851283785844717Bacillus thuringiensis BMB171 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_015391:1248583:126238712623871263112726Carnobacterium sp. 17-4 chromosome, complete genomeorotidine 5'-phosphate decarboxylase2e-37155
NC_007530:3694940:370022337002233700939717Bacillus anthracis str. 'Ames Ancestor', complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_005957:3716487:372229037222903723006717Bacillus thuringiensis serovar konkukian str. 97-27, completeorotidine 5'-phosphate decarboxylase4e-37154
NC_017200:3737185:374496337449633745679717Bacillus thuringiensis serovar finitimus YBT-020 chromosome,orotidine 5'-phosphate decarboxylase4e-37154
NC_008600:3724312:373081137308113731554744Bacillus thuringiensis str. Al Hakam, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_016771:3633327:364116836411683641884717Bacillus cereus NC7401, complete genomeorotidine 5'-phosphate decarboxylase5e-37154
NC_011658:3680829:368867036886703689386717Bacillus cereus AH187 chromosome, complete genomeorotidine 5'-phosphate decarboxylase5e-37154
NC_011969:3627980:363262936326293633345717Bacillus cereus Q1 chromosome, complete genomeorotidine 5'-phosphate decarboxylase6e-37154
NC_005945:3693471:370079137007913701507717Bacillus anthracis str. Sterne, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_003997:3692776:370009637000963700812717Bacillus anthracis str. Ames, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_012581:519969:537748537748538464717Bacillus anthracis str. CDC 684 chromosome, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_015660:2685842:270236627023662703085720Geobacillus thermoglucosidasius C56-YS93 chromosome, completeorotidine 5'-phosphate decarboxylase3e-37154
NC_011772:3863166:387038338703833871099717Bacillus cereus G9842, complete genomeorotidine 5'-phosphate decarboxylase3e-37154
NC_017208:3897253:390190039019003902616717Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeorotidine 5'-phosphate decarboxylase4e-37154
NC_016779:3660000:366595536659553666671717Bacillus cereus F837/76 chromosome, complete genomeOrotidine 5'-phosphate decarboxylase4e-37154
NC_003909:3671468:367808136780813678797717Bacillus cereus ATCC 10987, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_012472:3743473:374812337481233748839717Bacillus cereus 03BB102, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_012659:3692803:370012337001233700839717Bacillus anthracis str. A0248, complete genomeorotidine 5'-phosphate decarboxylase4e-37154
NC_013223:343344:363508363508364209702Desulfohalobium retbaense DSM 5692, complete genomeorotidine 5'-phosphate decarboxylase2e-36152
NC_013411:1941762:194176219417621942481720Geobacillus sp. Y412MC61, complete genomeorotidine 5'-phosphate decarboxylase1e-36152
NC_014915:1080793:108170610817061082425720Geobacillus sp. Y412MC52 chromosome, complete genomeorotidine 5'-phosphate decarboxylase1e-36152
NC_015873:924392:967526967526968239714Megasphaera elsdenii DSM 20460, complete genomeorotidine 5'-phosphate decarboxylase1e-36152
NC_008555:1874878:188116718811671881868702Listeria welshimeri serovar 6b str. SLCC5334, complete genomeorotidine 5'-phosphate decarboxylase1e-35149
NC_015516:1222632:123031812303181231046729Melissococcus plutonius ATCC 35311, complete genomeorotidine 5'-phosphate decarboxylase3e-35148
NC_002570:2649759:265542126554212656125705Bacillus halodurans C-125, complete genomeorotidine 5'-phosphate decarboxylase6e-35147
NC_021171:1354000:136650713665071367223717Bacillus sp. 1NLA3E, complete genomeorotidine 5'-phosphate decarboxylase2e-34145
NC_014019:4094750:409715740971574097879723Bacillus megaterium QM B1551 chromosome, complete genomeorotidine 5'-phosphate decarboxylase8e-34143
NC_014355:4151798:416927641692764169995720Candidatus Nitrospira defluvii, complete genomeorotidine 5'-phosphate decarboxylase5e-33140
NC_009848:1494253:150950815095081510212705Bacillus pumilus SAFR-032, complete genomeorotidine 5'-phosphate decarboxylase5e-33140
NC_000911:1358846:136383713638371364532696Synechocystis sp. PCC 6803, complete genomeorotidine 5'-phosphate decarboxylase6e-32137
NC_017039:1362292:136286413628641363559696Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeorotidine 5' monophosphate decarboxylase6e-32137
NC_017052:1362280:136285213628521363547696Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeorotidine 5' monophosphate decarboxylase6e-32137
NC_017277:1362082:136265413626541363349696Synechocystis sp. PCC 6803, complete genomeorotidine 5' monophosphate decarboxylase6e-32137
NC_017138:980696:995940995940996599660Bacillus megaterium WSH-002 chromosome, complete genomeOrotidine 5'-phosphate decarboxylase6e-31134
NC_013009:721823:722549722549723235687Neorickettsia risticii str. Illinois, complete genomeorotidine 5'-phosphate decarboxylase3e-30131
NC_007798:703922:704640704640705326687Neorickettsia sennetsu str. Miyayama, complete genomeorotidine 5'-phosphate decarboxylase7e-30130
NC_012440:373863:384653384653385345693Persephonella marina EX-H1, complete genomeorotidine 5'-phosphate decarboxylase1e-29129
NC_015572:427732:447541447541448266726Methylomonas methanica MC09 chromosome, complete genomeorotidine 5'-phosphate decarboxylase7e-28124
NC_018697:618832:637998637998638744747Cycloclasticus sp. P1 chromosome, complete genomeOrotidine 5'-phosphate decarboxylase1e-27123
NC_018643:1080514:108252210825221083193672Alpha proteobacterium HIMB5 chromosome, complete genomeorotidine-5'-phosphate decarboxylase4e-27121
NC_017161:810627:815723815723816394672Hydrogenobacter thermophilus TK-6 chromosome, complete genomeorotidine 5'-phosphate decarboxylase4e-25115
NC_013799:810636:815732815732816403672Hydrogenobacter thermophilus TK-6, complete genomeorotidine 5'-phosphate decarboxylase4e-25115
NC_008686:50750:519835198352687705Paracoccus denitrificans PD1222 chromosome 1, complete sequenceorotidine 5'-phosphate decarboxylase2e-24112
NC_018644:516157:550252550252550959708Alpha proteobacterium HIMB59 chromosome, complete genomeorotidine-5'-phosphate decarboxylase6e-24110
NC_007802:4071006:409545340954534096142690Jannaschia sp. CCS1, complete genomeorotidine 5'-phosphate decarboxylase3e-23108
NC_003911:3453764:347664634766463477380735Silicibacter pomeroyi DSS-3, complete genomeorotidine 5'-phosphate decarboxylase4e-23108
NC_008044:136844:136844136844137569726Silicibacter sp. TM1040, complete genomeorotidine 5'-phosphate decarboxylase1e-21103
NC_009952:592000:607474607474608172699Dinoroseobacter shibae DFL 12, complete genomeorotidine 5'-phosphate decarboxylase1e-2099.8
NC_009049:80184:801848018480882699Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceorotidine 5'-phosphate decarboxylase2e-2099
NC_015730:3853065:387466538746653875396732Roseobacter litoralis Och 149 chromosome, complete genomeorotidine 5'-phosphate decarboxylase PyrF2e-1995.9
NC_008209:695269:695269695269696000732Roseobacter denitrificans OCh 114, complete genomeorotidine 5'-phosphate decarboxylase5e-1994.4
NC_015416:2113949:211871521187152119374660Methanosaeta concilii GP-6 chromosome, complete genomeorotidine 5'-phosphate decarboxylase7e-0857.8
NC_009464:180335:204102204102204752651Uncultured methanogenic archaeon RC-I, complete genomeorotidine 5'-phosphate decarboxylase2e-0756.2
NC_003901:2479613:248299024829902483652663Methanosarcina mazei Go1, complete genomeorotidine 5'-phosphate decarboxylase3e-0755.5