Pre_GI: BLASTP Hits

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Query: NC_009439:608500:610486 Pseudomonas mendocina ymp, complete genome

Start: 610486, End: 611622, Length: 1137

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014931:2511423:2528048252804825291031056Variovorax paradoxus EPS chromosome, complete genome2-nitropropane dioxygenase NPD2e-125449
NC_010524:3302398:3322464332246433235251062Leptothrix cholodnii SP-6, complete genome2-nitropropane dioxygenase NPD2e-114412
NC_017195:2498113:2535016253501625361641149Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYrpB4e-56218
NC_019896:1483073:1488986148898614900291044Bacillus subtilis subsp. subtilis str. BSP1 chromosome, complete2-nitropropane dioxygenase YrpB6e-56218
NC_012483:483425:4945994945994956991101Acidobacterium capsulatum ATCC 51196, complete genomeoxidoreductase, 2-nitropropane dioxygenase family3e-55216
NC_014532:752807:7639237639237649841062Halomonas elongata DSM 2581, complete genome2-nitropropane dioxygenase4e-54212
NC_017167:1088713:1090581109058110916661086Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-12-nitropropane dioxygenase3e-54212
NC_009487:921884:9666489666489677151068Staphylococcus aureus subsp. aureus JH9 chromosome, complete2-nitropropane dioxygenase8e-52204
NC_016641:2291363:2291363229136322924301068Paenibacillus terrae HPL-003 chromosome, complete genomenitropropane dioxygenase / trans-enoyl-CoA reductase family protein3e-51202
NC_014323:3976351:4009351400935140104271077Herbaspirillum seropedicae SmR1 chromosome, complete genome2-nitropropane dioxygenase4e-49195
NC_016641:373623:3935413935413946141074Paenibacillus terrae HPL-003 chromosome, complete genomenitropropane dioxygenase / trans-enoyl-CoA reductase family protein6e-48191
NC_014206:1745203:1769485176948517705401056Geobacillus sp. C56-T3 chromosome, complete genome2-nitropropane dioxygenase NPD1e-44180
NC_016783:1397975:1398574139857414014832910Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein2e-34146
NC_016787:1350676:1369571136957113724802910Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein2e-34146
NC_016790:1345638:1345638134563813485472910Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein2e-34146
NC_017186:7333732:7352376735237673534251050Amycolatopsis mediterranei S699 chromosome, complete genome2-nitropropane dioxygenase3e-34145
NC_014318:7333688:7352332735233273533811050Amycolatopsis mediterranei U32 chromosome, complete genome2-nitropropane dioxygenase3e-34145
NC_010674:1170264:117653711765371177478942Clostridium botulinum B str. Eklund 17B, complete genomeputative enoyl-(acyl-carrier-protein) reductase II7e-31135
NC_007722:2993852:3015323301532330164381116Erythrobacter litoralis HTCC2594, complete genomeoxidoreductase, 2-nitropropane dioxygenase family protein1e-30134
NC_014210:5048502:5053468505346850545021035Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2-nitropropane dioxygenase NPD3e-30133
NC_010723:1133163:114043411404341141375942Clostridium botulinum E3 str. Alaska E43, complete genomeputative enoyl-(acyl-carrier-protein) reductase II4e-30132
NC_014393:4988127:499975749997575000698942Clostridium cellulovorans 743B chromosome, complete genomeenoyl-(acyl-carrier-protein) reductase II4e-30132
NC_015275:3299923:331126533112653312230966Clostridium lentocellum DSM 5427 chromosome, complete genomeenoyl-(acyl-carrier-protein) reductase II1e-29130
NC_009617:1278000:128190812819081282849942Clostridium beijerinckii NCIMB 8052 chromosome, complete genome2-nitropropane dioxygenase1e-29130
NC_020291:1266885:129108312910831292024942Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeenoyl-[acyl-carrier protein] reductase FabI2e-29130
NC_021182:4882494:489384748938474894785939Clostridium pasteurianum BC1, complete genomeputative enoyl-(acyl-carrier-protein) reductase II2e-29130
NC_007930:180281:190471190471191367897Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,Hypothetical dioxygenase/reductase2e-29130
NC_016782:1359000:1376494137649413793102817Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein7e-29128
NC_016786:1359064:1376464137646413792802817Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein7e-29128
NC_003030:3763054:377615137761513777083933Clostridium acetobutylicum ATCC 824, complete genomeDioxygenase related to 2-nitropropane dioxygenase7e-29128
NC_015687:3766000:377773437777343778666933Clostridium acetobutylicum DSM 1731 chromosome, complete genome2-nitropropane dioxygenase-like protein7e-29128
NC_017295:3762622:377550337755033776435933Clostridium acetobutylicum EA 2018 chromosome, complete genomeDioxygenase7e-29128
NC_004557:81362:876568765688618963Clostridium tetani E88, complete genomeenoyl-[acyl-carrier protein] reductase (NADH)1e-28127
NC_017179:1239991:124832012483201249249930Clostridium difficile BI1, complete genometrans-2-enoyl-ACP reductase1e-28127
NC_013315:1230214:123854312385431239472930Clostridium difficile CD196 chromosome, complete genometrans-2-enoyl-ACP reductase1e-28127
NC_013316:1225797:123615912361591237088930Clostridium difficile R20291, complete genometrans-2-enoyl-ACP reductase1e-28127
NC_012658:3923546:393612239361223937048927Clostridium botulinum Ba4 str. 657 chromosome, complete genome2-nitropropane dioxygenase family oxidoreductase2e-28127
NC_010516:3903867:391642839164283917354927Clostridium botulinum B1 str. Okra, complete genomeoxidoreductase, 2-nitropropane dioxygenase family2e-28126
NC_014328:4546390:455816545581654559103939Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeenoyl-[acyl-carrier protein] reductase6e-28125
NC_012563:4101000:411358741135874114513927Clostridium botulinum A2 str. Kyoto, complete genomeoxidoreductase, 2-nitropropane dioxygenase family7e-28125
NC_010520:3938490:395106339510633951989927Clostridium botulinum A3 str. Loch Maree, complete genomeoxidoreductase, 2-nitropropane dioxygenase family8e-28124
NC_009698:3706154:371871337187133719639927Clostridium botulinum A str. Hall chromosome, complete genome2-nitropropane dioxygenase2e-27123
NC_009697:3809044:382160338216033822529927Clostridium botulinum A str. ATCC 19397 chromosome, complete2-nitropropane dioxygenase2e-27123
NC_009495:3832500:384506938450693845995927Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeoxidoreductase, 2-nitropropane dioxygenase2e-27123
NC_009699:3940984:395354739535473954473927Clostridium botulinum F str. Langeland chromosome, complete genome2-nitropropane dioxygenase6e-27122
NC_017297:3939328:395189039518903952816927Clostridium botulinum F str. 230613 chromosome, complete genomeoxidoreductase, 2-nitropropane dioxygenase family6e-27122
NC_018664:1699618:171267017126701713608939Clostridium acidurici 9a chromosome, complete genomeenoyl-[acyl-carrier protein] reductase FabI4e-27122
NC_011830:4031901:405860740586074059554948Desulfitobacterium hafniense DCB-2, complete genomeenoyl-(acyl-carrier-protein) reductase II9e-27121
NC_014964:1309845:132009813200981321048951Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeenoyl-(acyl-carrier-protein) reductase II1e-26121
NC_015391:1323171:133716313371631338122960Carnobacterium sp. 17-4 chromosome, complete genomeputative anionic nitroalkane dioxygenase1e-26120
NC_011894:3029964:3053778305377830547941017Methylobacterium nodulans ORS 2060, complete genome2-nitropropane dioxygenase NPD1e-26120
NC_009718:643200:680010680010680981972Fervidobacterium nodosum Rt17-B1, complete genome2-nitropropane dioxygenase NPD2e-26120
NC_015958:1422319:143191714319171432858942Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeenoyl-(acyl-carrier-protein) reductase II3e-26119
NC_015425:34861:430814308144031951Clostridium botulinum BKT015925 chromosome, complete genome2-nitropropane dioxygenase2e-25116
NC_019903:2708500:272005327200532721000948Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,enoyl-ACP reductase2e-24113
NC_014633:339181:346428346428347369942Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceenoyl-(acyl-carrier-protein) reductase II4e-24112
NC_019978:1410041:142132714213271422271945Halobacteroides halobius DSM 5150, complete genomeputative enoyl-(acyl-carrier-protein) reductase II6e-24112
NC_008593:37456:438044380444754951Clostridium novyi NT, complete genomeenoyl-(acyl-carrier-protein) reductase II2e-23110
NC_013928:395028:417033417033417998966Streptococcus mutans NN2025, complete genometrans-2-enoyl-ACP reductase6e-23108
NC_004350:1252500:125580412558041256787984Streptococcus mutans UA159, complete genomeputative enoyl-(acyl-carrier-protein) reductase7e-23108
NC_004369:1051013:1066123106612310671481026Corynebacterium efficiens YS-314, complete genomeputative oxidoreductase5e-22105
NC_007164:62816:764697646977440972Corynebacterium jeikeium K411, complete genomeputative dioxygenase related to 2-nitropropane dioxygenases3e-20100
NC_009053:895965:910504910504911478975Actinobacillus pleuropneumoniae L20, complete genomedioxygenase2e-20100
NC_015185:875324:888570888570889529960Desulfurobacterium thermolithotrophum DSM 11699 chromosome,enoyl-(acyl-carrier-protein) reductase II3e-2099.8
NC_012778:1778654:178990017899001790829930Eubacterium eligens ATCC 27750, complete genomeenoyl-acyl carrier protein(ACP) reductase5e-2099
NC_016641:438500:447973447973448938966Paenibacillus terrae HPL-003 chromosome, complete genome2-nitropropane dioxygenase2e-1997.1
NC_012108:3922511:392517539251753926062888Desulfobacterium autotrophicum HRM2, complete genomeputative 2-nitropropane dioxygenase (Nitroalkane oxidase) (2-NPD)3e-1996.7
NC_010278:860165:873988873988874962975Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,dioxygenase3e-1996.3
NC_002570:207555:226276226276227223948Bacillus halodurans C-125, complete genomehypothetical protein5e-1995.9
NC_014472:3785319:379108637910863792027942Flavobacteriales bacterium HTCC2170 chromosome, complete genomeputative dioxygenase7e-1995.1
NC_017093:2129450:2131831213183121329251095Actinoplanes missouriensis 431, complete genomeputative dioxygenase7e-1995.1
NC_016111:581143:5833375833375843651029Streptomyces cattleya NRRL 8057, complete genome2-nitropropane dioxygenase9e-1994.7
NC_013406:3400114:341051034105103411475966Paenibacillus sp. Y412MC10 chromosome, complete genome2-nitropropane dioxygenase NPD1e-1894.4
NC_015501:1669521:168331216833121684268957Porphyromonas asaccharolytica DSM 20707 chromosome, complete2-nitropropane dioxygenase NPD1e-1894.4
NC_013939:1841890:184629118462911847262972Deferribacter desulfuricans SSM1, complete genome2-nitropropane dioxygenase2e-1894
NC_016599:144844:146420146420147367948Owenweeksia hongkongensis DSM 17368 chromosome, complete genome2-nitropropane dioxygenase2e-1893.6
NC_008576:4467745:448863944886394489634996Magnetococcus sp. MC-1, complete genome2-nitropropane dioxygenase, NPD2e-1790.9
NC_016641:438500:446652446652447620969Paenibacillus terrae HPL-003 chromosome, complete genomeputative dioxygenase4e-1789.4
NC_021184:3793285:381115938111593812127969Desulfotomaculum gibsoniae DSM 7213, complete genome2-nitropropane dioxygenase-like enzyme5e-1789
NC_011149:1578451:158303215830321584012981Salmonella enterica subsp. enterica serovar Agona str. SL483,2-nitropropane dioxygenase NPD1e-1688.2
NC_020133:5710661:5713016571301657140831068Mycobacterium liflandii 128FXT, complete genome2-nitropropane dioxygenase1e-1687.8
NC_007974:2097334:213352121335212134492972Ralstonia metallidurans CH34 chromosome 2, complete sequence2-nitropropane dioxygenase, NPD2e-1687.4
NC_010612:6113155:6117733611773361188001068Mycobacterium marinum M, complete genome2-nitropropane dioxygenase2e-1687
NC_015593:2271097:2277812227781222788251014Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete2-nitropropane dioxygenase NPD2e-1687
NC_011094:1584038:159923015992301600210981Salmonella enterica subsp. enterica serovar Schwarzengrund str2-nitropropane dioxygenase3e-1686.7
NC_018750:1835500:1856667185666718577191053Streptomyces venezuelae ATCC 10712, complete genome2-nitropropane dioxygenase2e-1686.7
NC_007802:4071006:4075837407583740768621026Jannaschia sp. CCS1, complete genome2-nitropropane dioxygenase, NPD3e-1686.3
NC_006833:976010:9908739908739919131041Wolbachia endosymbiont strain TRS of Brugia malayi, completeProbable trans-2-enoyl-ACP reductase, FabK4e-1686.3
NC_007802:1093785:1102176110217611031921017Jannaschia sp. CCS1, complete genome2-nitropropane dioxygenase, NPD5e-1685.9
NC_014479:2505823:251500225150022515961960Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative dioxygenase9e-1684.7
NC_013798:345339:367321367321368289969Streptococcus gallolyticus UCN34, complete genomeputative dioxygenases related to 2-nitropropane dioxygenase2e-1583.6
NC_015576:4070195:4077114407711440782501137Mycobacterium sp. JDM601 chromosome, complete genomedioxygenase6e-1478.6
NC_017904:2724941:275088627508862751851966Mycobacterium sp. MOTT36Y chromosome, complete genomehypothetical protein7e-1375.5
NC_013929:7606749:7608036760803676090971062Streptomyces scabiei 87.22 chromosome, complete genomeoxidoreductase1e-1274.7
NC_010623:1871492:1901647190164719027621116Burkholderia phymatum STM815 chromosome 2, complete sequence2-nitropropane dioxygenase NPD2e-1273.9
NC_007333:1677406:1698020169802016991561137Thermobifida fusca YX, complete genomehypothetical protein4e-1272.8
NC_007907:2995889:302795330279533028897945Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1272.4
NC_011830:4031901:405544540554454056389945Desulfitobacterium hafniense DCB-2, complete genome2-nitropropane dioxygenase NPD5e-1272.4
NC_019978:1410041:141815914181591419130972Halobacteroides halobius DSM 5150, complete genome2-nitropropane dioxygenase-like enzyme7e-1272
NC_015555:114977:1295271295271306571131Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete2-nitropropane dioxygenase NPD1e-1170.9
NC_007347:1596040:1604666160466616056731008Ralstonia eutropha JMP134 chromosome 1, complete sequence2-nitropropane dioxygenase, NPD2e-1170.9
NC_013856:169974:1773781773781784391062Azospirillum sp. B510 plasmid pAB510b, complete sequenceenoyl-[acyl carrier protein] reductase II5e-1168.9
NC_015593:158107:191772191772192743972Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete2-nitropropane dioxygenase NPD1e-1067.8
NC_015499:1466794:147894214789421479907966Thermodesulfobium narugense DSM 14796 chromosome, complete genome2-nitropropane dioxygenase NPD3e-1066.2
NC_017297:3939328:3954672395467239557301059Clostridium botulinum F str. 230613 chromosome, complete genomeoxidoreductase, 2-nitropropane dioxygenase family4e-1066.2
NC_009699:3940984:3956329395632939573871059Clostridium botulinum F str. Langeland chromosome, complete genome2-nitropropane dioxygenase4e-1066.2
NC_009698:3706154:3721495372149537225531059Clostridium botulinum A str. Hall chromosome, complete genome2-nitropropane dioxygenase4e-1066.2
NC_009697:3809044:3824385382438538254431059Clostridium botulinum A str. ATCC 19397 chromosome, complete2-nitropropane dioxygenase4e-1066.2
NC_009495:3832500:3847851384785138489091059Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeoxidoreductase, 2-nitropropane dioxygenase4e-1066.2
NC_010516:3903867:3919204391920439202621059Clostridium botulinum B1 str. Okra, complete genomeoxidoreductase, 2-nitropropane dioxygenase family5e-1065.9
NC_009922:2487492:2509606250960625106821077Alkaliphilus oremlandii OhILAs, complete genome2-nitropropane dioxygenase NPD6e-1065.5
NC_014633:339181:347440347440348375936Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence2-nitropropane dioxygenase6e-1065.5
NC_012563:4101000:4116369411636941174271059Clostridium botulinum A2 str. Kyoto, complete genomeoxidoreductase, 2-nitropropane dioxygenase family7e-1065.5
NC_013517:825100:8402958402958413801086Sebaldella termitidis ATCC 33386, complete genome2-nitropropane dioxygenase NPD1e-0964.7
NC_016584:4860360:489315648931564894109954Desulfosporosinus orientis DSM 765 chromosome, complete genome2-nitropropane dioxygenase1e-0964.3
NC_008699:2916752:2918393291839329194811089Nocardioides sp. JS614, complete genome2-nitropropane dioxygenase, NPD2e-0963.9
NC_009511:4582188:4600902460090246019211020Sphingomonas wittichii RW1 chromosome, complete genome2-nitropropane dioxygenase2e-0963.9
NC_008786:2809985:281327728132772814143867Verminephrobacter eiseniae EF01-2, complete genome2-nitropropane dioxygenase, NPD2e-0963.5
NC_010520:3938490:3953845395384539549031059Clostridium botulinum A3 str. Loch Maree, complete genomeoxidoreductase, 2-nitropropane dioxygenase family3e-0963.2
NC_012658:3923546:3938905393890539399631059Clostridium botulinum Ba4 str. 657 chromosome, complete genome2-nitropropane dioxygenase family oxidoreductase4e-0962.8
NC_019903:2708500:271612127161212717065945Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,2-nitropropane dioxygenase7e-0962
NC_014393:4988127:5003516500351650045861071Clostridium cellulovorans 743B chromosome, complete genome2-nitropropane dioxygenase NPD1e-0861.6
NC_016582:389729:395669395669396634966Streptomyces bingchenggensis BCW-1 chromosome, complete genomedioxygenase4e-0859.3
NC_008268:7180663:720702672070267208012987Rhodococcus sp. RHA1, complete genomepossible 2-nitropropane dioxygenase3e-0756.6