Pre_GI: BLASTP Hits

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Query: NC_004129:4596040:4609953 Pseudomonas fluorescens Pf-5, complete genome

Start: 4609953, End: 4610891, Length: 939

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:2238437:224218022421802243106927Pseudomonas putida F1, complete genomepeptidase S11, D-alanyl-D-alanine carboxypeptidase 17e-118423
NC_008800:3123495:313643231364323137367936Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-alanyl-D-alanine endopeptidase2e-111402
NC_015224:1641819:164932116493211650256936Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,D-alanyl-D-alanine endopeptidase2e-111402
NC_017265:2940539:294237229423722943307936Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Murein-DD-endopeptidase3e-109394
NC_015556:130437:161038161038161946909Pseudomonas fulva 12-X chromosome, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 11e-102372
NC_008322:3758500:377954537795453780501957Shewanella sp. MR-7, complete genomepeptidase S11, D-alanyl-D-alanine carboxypeptidase 17e-99360
NC_012667:504534:523666523666524616951Vibrio cholerae MJ-1236 chromosome 2, complete genomeD-alanyl-D-alanine endopeptidase3e-91335
NC_009456:383819:402952402952403902951Vibrio cholerae O395 chromosome 1, complete sequenceD-alanyl-D-alanine endopeptidase3e-91335
NC_014914:1327245:1331890133189013330591170Taylorella equigenitalis MCE9 chromosome, complete genomeMurein-DD-endopeptidase1e-53210
NC_015381:3457784:3501769350176935030041236Burkholderia gladioli BSR3 chromosome 1, complete sequenceD-alanyl-D-alanine carboxypeptidase9e-50197
NC_014538:1311500:1318171131817113193191149Thermoanaerobacter sp. X513 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase6e-2098.6
NC_010320:1585974:1595063159506315962111149Thermoanaerobacter sp. X514 chromosome, complete genomeserine-type D-Ala-D-Ala carboxypeptidase6e-2098.6
NC_010321:1177238:1188594118859411897421149Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeserine-type D-Ala-D-Ala carboxypeptidase9e-2097.8
NC_014964:1169925:1180785118078511819331149Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completeSerine-type D-Ala-D-Ala carboxypeptidase9e-2097.8
NC_016012:561687:5785855785855796791095Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeD-alanyl-D-alanine carboxypeptidase5e-1892
NC_003366:2057656:208117420811742082049876Clostridium perfringens str. 13, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1789.4
NC_011830:2940500:2945743294574329470141272Desulfitobacterium hafniense DCB-2, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-1687
NC_009454:1246393:1263383126338312645611179Pelotomaculum thermopropionicum SI, complete genomeD-alanyl-D-alanine carboxypeptidase1e-1584
NC_013216:3376186:3377539337753933786601122Desulfotomaculum acetoxidans DSM 771, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase5e-1582
NC_003210:2879906:289624128962412897059819Listeria monocytogenes EGD-e, complete genomehypothetical protein7e-1581.6
NC_015913:624859:6390826390826401761095Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeD-alanyl-D-alanine carboxypeptidase1e-1480.9
NC_015589:3085442:3089729308972930909761248Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-1377.8
NC_019978:416637:4181514181514193321182Halobacteroides halobius DSM 5150, complete genomeD-alanyl-D-alanine carboxypeptidase4e-1375.5
NC_014654:2180994:2194916219491621960431128Halanaerobium sp. 'sapolanicus' chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase9e-1374.3
NC_015687:2145452:2163378216337821644331056Clostridium acetobutylicum DSM 1731 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase1e-1274.3
NC_010674:2435241:2458174245817424593641191Clostridium botulinum B str. Eklund 17B, complete genomepenicillin-binding protein DacF2e-1273.2
NC_011773:1277606:1299059129905913003451287Bacillus cereus AH820 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase2e-1273.2
NC_010674:2435241:245433324543332455202870Clostridium botulinum B str. Eklund 17B, complete genomeD-alanyl-D-alanine carboxypeptidase6e-1271.6
NC_014377:1227850:1236864123686412380361173Thermosediminibacter oceani DSM 16646 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase6e-1271.6
NC_009654:3215205:3220132322013232212801149Marinomonas sp. MWYL1, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-1170.5
NC_008148:2290806:2311245231124523123991155Rubrobacter xylanophilus DSM 9941, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-1170.5
NC_010520:1586000:1603617160361716048851269Clostridium botulinum A3 str. Loch Maree, complete genomeD-alanyl-D-alanine carboxypeptidase family protein3e-1169.3
NC_009495:1516000:1530641153064115319151275Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase6e-1168.6
NC_016616:915755:9173309173309184991170Dechlorosoma suillum PS chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase2e-1067
NC_014833:2988814:3003329300332930047801452Ruminococcus albus 7 chromosome, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 12e-1066.6
NC_016012:396910:404685404685405545861Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeD-alanyl-D-alanine carboxypeptidase3e-1066.2
NC_013171:1364464:1382623138262313838341212Anaerococcus prevotii DSM 20548, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase3e-1066.2
NC_016593:2370000:2391941239194123931161176Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeD-alanyl-D-alanine carboxypeptidase dacF9e-1064.7
NC_011294:878896:8943898943898955911203Salmonella enterica subsp. enterica serovar Enteritidis strD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_011274:896802:9122969122969134981203Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91D-alanyl-D-alanine carboxypeptidase fraction C1e-0964.3
NC_011094:973140:9886279886279898291203Salmonella enterica subsp. enterica serovar Schwarzengrund strD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_011080:924326:9398309398309410321203Salmonella enterica subsp. enterica serovar Newport str. SL254,D-alanyl-D-alanine carboxypeptidase DacC1e-0964.3
NC_006905:946418:9632449632449644461203Salmonella enterica subsp. enterica serovar Choleraesuis strD-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a1e-0964.3
NC_010102:2178594:2181622218162221828241203Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-0964.3
NC_012125:894955:9104489104489116501203Salmonella enterica subsp. enterica serovar Paratyphi C strainD-alanyl-D-alanine carboxypeptidase fraction C1e-0964.3
NC_003197:920000:9354979354979366991203Salmonella typhimurium LT2, complete genomeD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_016810:919266:9347589347589359601203Salmonella enterica subsp. enterica serovar Typhimurium strD-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)1e-0964.3
NC_011083:967260:9827649827649839661203Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,D-alanyl-D-alanine carboxypeptidase DacC1e-0964.3
NC_017046:919249:9347409347409359421203Salmonella enterica subsp. enterica serovar Typhimurium str. 798D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6 precursor)1e-0964.3
NC_016863:920346:9358389358389370401203Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1D-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_016860:959609:9751019751019763031203Salmonella enterica subsp. enterica serovar Typhimurium strD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_016857:919266:9347589347589359601203Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74D-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_016856:921057:9365499365499377511203Salmonella enterica subsp. enterica serovar Typhimurium str. 14028SD-alanyl-D-alanine carboxypeptidase1e-0964.3
NC_011205:944125:9595559595559608351281Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853D-alanyl-D-alanine carboxypeptidase fraction C1e-0963.9
NC_014624:1369642:140322214032221404166945Eubacterium limosum KIST612 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase1e-0963.9
NC_012947:2898179:2916537291653729177391203Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeD-alanyl-D-alanine carboxypeptidase fraction C4e-0962.4
NC_011961:304158:303190303190304161972Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequenceD,D carboxypeptidase7e-0961.6
NC_003902:4111283:4112467411246741136781212Xanthomonas campestris pv. campestris str. ATCC 33913, completepenicillin-binding protein 67e-0961.6
NC_017271:4058642:4058642405864240598531212Xanthomonas campestris pv. raphani 756C chromosome, completepenicillin-binding protein 66e-0961.6
NC_012917:1923059:1942993194299319441981206Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeBeta-lactamase8e-0961.2
NC_014171:1:1721317213184601248Bacillus thuringiensis BMB171 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase1e-0860.8
NC_014538:1311500:1334252133425213353971146Thermoanaerobacter sp. X513 chromosome, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-0860.8
NC_018665:1:2029320293215401248Exiguobacterium antarcticum B7 chromosome, complete genomePeptidase S11 D-alanyl-D-alanine carboxypeptidase2e-0860.5
NC_016109:116995:133483133483134433951Kitasatospora setae KM-6054, complete genomeputative peptidase S11 family protein5e-0858.9
NC_017208:1:1699216992182391248Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeD-alanyl-D-alanine carboxypeptidase6e-0858.5
NC_011567:1:1826018260196031344Anoxybacillus flavithermus WK1, complete genomeD-alanyl-D-alanine carboxypeptidase7e-0858.2
NC_016622:527688:5455995455995468461248Azospirillum lipoferum 4B, complete genomeputative D-alanyl-D-alanine carboxypeptidase1e-0757.4
NC_011899:2286884:2303163230316323043291167Halothermothrix orenii H 168, complete genomepeptidase S11 D-alanyl-D-alanine carboxypeptidase 12e-0757
NC_016002:1765959:1778355177835517795481194Pseudogulbenkiania sp. NH8B, complete genomeserine-type D-Ala-D-Ala carboxypeptidase2e-0756.6
NC_010556:6612:2034120341215881248Exiguobacterium sibiricum 255-15, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase2e-0756.6
NC_016622:1599681:1625572162557216267621191Azospirillum lipoferum 4B, complete genomeD-alanyl-D-alanine carboxypeptidase2e-0756.6
NC_011660:2756860:2764391276439127657281338Listeria monocytogenes HCC23 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase3e-0755.8
NC_016778:96792:9835398353997861434Brucella canis HSK A52141 chromosome 1, complete sequenceserine-type D-Ala-D-Ala carboxypeptidase7e-0754.7
NC_010742:955104:9724079724079735971191Brucella abortus S19 chromosome 1, complete sequenceD-alanyl-D-alanine carboxypeptidase 1, S11 family9e-0754.7
NC_007618:955000:9712289712289724181191Brucella melitensis biovar Abortus 2308 chromosome I, completeD-alanyl-D-alanine carboxypeptidase 1, S11 family9e-0754.7
NC_006932:956805:9741089741089752981191Brucella abortus biovar 1 str. 9-941 chromosome I, completeD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_016795:1441024:1442829144282914440191191Brucella abortus A13334 chromosome 1, complete sequenceserine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_004310:937800:9551089551089562981191Brucella suis 1330 chromosome I, complete sequenceD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_015857:963570:9808769808769820661191Brucella pinnipedialis B2/94 chromosome chromosome 1, completeserine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_010169:957565:9748729748729760621191Brucella suis ATCC 23445 chromosome I, complete sequenceSerine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_003317:1030220:1032025103202510332151191Brucella melitensis 16M chromosome I, complete sequenceD-ALANYL-D-ALANINE CARBOXYPEPTIDASE9e-0754.7
NC_010103:936250:9535589535589547481191Brucella canis ATCC 23365 chromosome I, complete sequenceSerine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_012441:956609:9739169739169751061191Brucella melitensis ATCC 23457 chromosome I, complete sequenceserine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_013119:942079:9593869593869605761191Brucella microti CCM 4915 chromosome 1, complete sequenceD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_016797:937753:9550619550619562511191Brucella suis VBI22 chromosome I, complete sequenceD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_017244:956554:9738729738729750621191Brucella melitensis M28 chromosome chromosome 1, complete sequenceserine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_017246:956868:9741859741859753751191Brucella melitensis M5-90 chromosome chromosome I, completeserine-type D-Ala-D-Ala carboxypeptidase9e-0754.7
NC_017248:953131:9703059703059714951191Brucella melitensis NI chromosome chromosome I, complete sequenceD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_017251:937786:9550949550949562841191Brucella suis 1330 chromosome I, complete genomeD-alanyl-D-alanine carboxypeptidase9e-0754.7
NC_008021:879508:8962668962668976211356Streptococcus pyogenes MGAS9429, complete genomeD-alanyl-D-alanine serine-type carboxypeptidase1e-0654.3
NC_009348:1064664:1089711108971110909011191Aeromonas salmonicida subsp. salmonicida A449, complete genomeSerine-type D-Ala-D-Ala carboxypeptidase1e-0653.9
NC_008043:615049:6388996388996400801182Silicibacter sp. TM1040 mega plasmid, complete sequenceSerine-type D-Ala-D-Ala carboxypeptidase2e-0653.5
NC_013504:447891:471890471890472816927Lactobacillus johnsonii FI9785 chromosome, complete genomehypothetical protein3e-0652.8
NC_016612:3361802:3361802336180233630041203Klebsiella oxytoca KCTC 1686 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase3e-0652.8
NC_019897:700332:731885731885732826942Thermobacillus composti KWC4 chromosome, complete genomeD-alanyl-D-alanine carboxypeptidase3e-0652.8
NC_003454:677699:6959146959146970201107Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeD-alanyl-D-alanine carboxypeptidase7e-0651.6
NC_005362:550823:574927574927575853927Lactobacillus johnsonii NCC 533, complete genomeD-alanyl-D-alanine carboxypeptidase8e-0651.6