Pre_GI Gene

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Host: NC_008043 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008043:615049 Silicibacter sp. TM1040 mega plasmid, complete sequence

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
614751615059309hypothetical protein
6150496161011053hypothetical proteinBLASTP
616098616508411hypothetical proteinBLASTP
6165056179921488FAD linked oxidase-likeQuickGO ontologyBLASTP
6183026215143213Reductive dehalogenaseQuickGO ontologyBLASTP
622244623698145516S ribosomal RNAQuickGO ontologyBLASTP
62383962391577tRNA-IleQuickGO ontology
62398162405676tRNA-AlaQuickGO ontologyBLASTP
624601627444284423S ribosomal RNAQuickGO ontologyBLASTP
6276826277961155S ribosomal RNAQuickGO ontologyBLASTP
62784862792477tRNA-MetQuickGO ontology
6281946292821089hypothetical proteinBLASTP
6292926308241533hypothetical proteinBLASTP
6311986323461149hypothetical proteinBLASTP
632527632745219hypothetical proteinBLASTP
632864633151288hypothetical proteinBLASTP
633225633935711hypothetical protein
6341046353391236phage integraseQuickGO ontologyBLASTP
636897637490594phage integraseQuickGO ontologyBLASTP
63757063765990tRNA-SerQuickGO ontology
637924638838915Sporulation relatedQuickGO ontologyBLASTP
6388996400801182Serine-type D-Ala-D-Ala carboxypeptidaseQuickGO ontologyBLASTP
640077640721645Thymidylate kinaseQuickGO ontologyBLASTP
6407186418391122DNA-directed DNA polymeraseQuickGO ontologyBLASTP
641900642703804TatD-related deoxyribonucleaseQuickGO ontologyBLASTP
642703643500798beta-lactamase-likeQuickGO ontologyBLASTP