Pre_GI: BLASTN Hits

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Query: NC_005126:3630459 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 3630459, End: 3688478, Length: 58020

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome07420BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome04601BLASTN svgBLASTP svg
NC_005126:12230421223042125359930558Photorhabdus luminescens subsp. laumondii TTO1, complete genome04595BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome04587BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome01624BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome01439BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome01439BLASTN svgBLASTP svg
NC_012962:35680463568046362047652431Photorhabdus asymbiotica, complete genome0729BLASTN svgBLASTP svg
NC_005126:31217223121722318069058969Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-160575BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome3e-131478BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-89339BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome2e-67266BLASTN svgBLASTP svg
NC_012962:44270004427000445406927070Photorhabdus asymbiotica, complete genome1e-56230BLASTN svgBLASTP svg
NC_005126:34965834965840029550638Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-56230BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-56228BLASTN svgBLASTP svg
NC_005126:44239644423964444767223709Photorhabdus luminescens subsp. laumondii TTO1, complete genome5e-56228BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-55226BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-55224BLASTN svgBLASTP svg
NC_012962:10415181041518106637824861Photorhabdus asymbiotica, complete genome1e-53220BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-53220BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-53220BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-53220BLASTN svgBLASTP svg
NC_005126:15490661549066157724728182Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-52214BLASTN svgBLASTP svg
NC_005126:34853303485330350809922770Photorhabdus luminescens subsp. laumondii TTO1, complete genome8e-52214BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome8e-52214BLASTN svgBLASTP svg
NC_012962:26395002639500266574326244Photorhabdus asymbiotica, complete genome3e-51212BLASTN svgBLASTP svg
NC_012962:30600633060063308387423812Photorhabdus asymbiotica, complete genome2e-49206BLASTN svgBLASTP svg
NC_012962:82090982090984059919691Photorhabdus asymbiotica, complete genome5e-47198BLASTN svgBLASTP svg
NC_012962:13176021317602134444626845Photorhabdus asymbiotica, complete genome2e-46196BLASTN svgBLASTP svg
NC_012962:18270001827000184987822879Photorhabdus asymbiotica, complete genome3e-45192BLASTN svgBLASTP svg
NC_005126:89242289242291989627475Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-44188BLASTN svgBLASTP svg
NC_012962:30307263030726305134020615Photorhabdus asymbiotica, complete genome7e-40174BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome1e-32151BLASTN svgBLASTP svg
NC_014228:33915003391500342834536846Xenorhabdus nematophila ATCC 19061, complete genome1e-32151BLASTN svgBLASTP svg
NC_012962:86929586929589218422890Photorhabdus asymbiotica, complete genome2e-30143BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome3e-23119BLASTN svgBLASTP svg
NC_014228:3591758*3591758361409922342Xenorhabdus nematophila ATCC 19061, complete genome2e-21113BLASTN svgBLASTP svg
NC_012962:11890211189021120825819238Photorhabdus asymbiotica, complete genome8e-21111BLASTN svgBLASTP svg
NC_011149:31870223187022321200624985Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-18103BLASTN svgBLASTP svg
NC_003198:3126548*3126548315161725070Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-1695.6BLASTN svgBLASTP svg
NC_004631:3112043*3112043313711225070Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-1695.6BLASTN svgBLASTP svg
NC_014228:1336466*1336466135833321868Xenorhabdus nematophila ATCC 19061, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_003197:23274742327474236419536722Salmonella typhimurium LT2, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_003198:22978372297837232227924443Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1593.7BLASTN svgBLASTP svg
NC_003198:2453074*2453074247785124778Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1593.7BLASTN svgBLASTP svg
NC_004631:685357*68535771085325497Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1593.7BLASTN svgBLASTP svg
NC_006511:682863*68286370873225870Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC2e-1593.7BLASTN svgBLASTP svg
NC_010102:683444*68344472210838665Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1593.7BLASTN svgBLASTP svg
NC_011080:23426722342672236709924428Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1593.7BLASTN svgBLASTP svg
NC_011083:23750612375061241289137831Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1593.7BLASTN svgBLASTP svg
NC_011149:22945002294500231681122312Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-1593.7BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome2e-1593.7BLASTN svgBLASTP svg
NC_012962:13646381364638138528120644Photorhabdus asymbiotica, complete genome3e-1489.7BLASTN svgBLASTP svg
NC_006511:3079512*3079512310454825037Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC1e-1387.7BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_014228:1929665*1929665198074651082Xenorhabdus nematophila ATCC 19061, complete genome5e-1385.7BLASTN svgBLASTP svg
NC_013722:1816561*1816561186559949039Xanthomonas albilineans, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_013722:1785692*1785692183919253501Xanthomonas albilineans, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_004631:3910451*3910451393705126601Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-1077.8BLASTN svgBLASTP svg
NC_003198:3924952*3924952395155226601Salmonella enterica subsp. enterica serovar Typhi str. CT18,1e-1077.8BLASTN svgBLASTP svg
NC_004463:22624672262467231174249276Bradyrhizobium japonicum USDA 110, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_013722:850307*85030787951329207Xanthomonas albilineans, complete genome5e-1075.8BLASTN svgBLASTP svg
NC_014722:1467996*1467996149010322108Burkholderia rhizoxinica HKI 454, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_013961:2579000*2579000261224833249Erwinia amylovora, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_004631:3030580*3030580304986119282Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-0971.9BLASTN svgBLASTP svg
NC_003198:3042000*3042000306436622367Salmonella enterica subsp. enterica serovar Typhi str. CT18,7e-0971.9BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_005126:94922694922696988520660Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_004088:26654326654328592319381Yersinia pestis KIM, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome3e-0869.9BLASTN svgBLASTP svg
AC_000091:45693794569379459254323165Escherichia coli W3110 DNA, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_006905:23552902355290237961224323Salmonella enterica subsp. enterica serovar Choleraesuis str3e-0869.9BLASTN svgBLASTP svg
NC_008149:40533634053363407274419382Yersinia pestis Nepal516, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_010102:38515003851500387645224953Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-0869.9BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_010634:42349324234932425567620745Yersinia pseudotuberculosis PB1/+, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_011083:3915500*3915500393961024111Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-0869.9BLASTN svgBLASTP svg
NC_014228:33538963353896338544531550Xenorhabdus nematophila ATCC 19061, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_014500:1862000*1862000191726855269Dickeya dadantii 3937 chromosome, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_007777:28410002841000290393262933Frankia sp. CcI3, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_014718:630188*63018865954429357Burkholderia rhizoxinica HKI 454 chromosome, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_020063:974369743612048123046Enterobacteriaceae bacterium strain FGI 57, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_014718:440960*44096046077219813Burkholderia rhizoxinica HKI 454 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_011770:31634803163480319982036341Pseudomonas aeruginosa LESB58, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,7e-0661.9BLASTN svgBLASTP svg
NC_009792:26887472688747271473325987Citrobacter koseri ATCC BAA-895, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_008782:2568027*2568027262351455488Acidovorax sp. JS42, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_005126:32049803204980322748422505Photorhabdus luminescens subsp. laumondii TTO1, complete genome7e-0661.9BLASTN svgBLASTP svg
NC_004547:1683593*1683593172730343711Erwinia carotovora subsp. atroseptica SCRI1043, complete genome7e-0661.9BLASTN svgBLASTP svg