Pre_GI: BLASTN Hits

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Query: NC_005126:349658 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 349658, End: 400295, Length: 50638

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012962:29397629397631522521250Photorhabdus asymbiotica, complete genome06639BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome02966BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome02964BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome02964BLASTN svgBLASTP svg
NC_005126:12230421223042125359930558Photorhabdus luminescens subsp. laumondii TTO1, complete genome02962BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome02962BLASTN svgBLASTP svg
NC_005126:49196894919689494365923971Photorhabdus luminescens subsp. laumondii TTO1, complete genome02962BLASTN svgBLASTP svg
NC_005126:4824500*4824500485430329804Photorhabdus luminescens subsp. laumondii TTO1, complete genome02139BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome01798BLASTN svgBLASTP svg
NC_014228:4360676*4360676438499224317Xenorhabdus nematophila ATCC 19061, complete genome0648BLASTN svgBLASTP svg
NC_013421:11435001143500116948625987Pectobacterium wasabiae WPP163, complete genome1e-93353BLASTN svgBLASTP svg
NC_014228:43313274331327435436923043Xenorhabdus nematophila ATCC 19061, complete genome4e-93351BLASTN svgBLASTP svg
NC_009348:2631759*2631759265138819630Aeromonas salmonicida subsp. salmonicida A449, complete genome7e-89337BLASTN svgBLASTP svg
NC_010634:42349324234932425567620745Yersinia pseudotuberculosis PB1/+, complete genome6e-80307BLASTN svgBLASTP svg
NC_013592:14245601424560145021625657Dickeya dadantii Ech586, complete genome2e-79305BLASTN svgBLASTP svg
NC_005126:5188976*5188976521454825573Photorhabdus luminescens subsp. laumondii TTO1, complete genome2e-79305BLASTN svgBLASTP svg
NC_008149:40533634053363407274419382Yersinia pestis Nepal516, complete genome1e-77299BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome1e-77299BLASTN svgBLASTP svg
NC_004088:26654326654328592319381Yersinia pestis KIM, complete genome1e-77299BLASTN svgBLASTP svg
NC_003143:40068844006884402857921696Yersinia pestis CO92, complete genome1e-77299BLASTN svgBLASTP svg
NC_010465:42909542909545249323399Yersinia pseudotuberculosis YPIII, complete genome4e-75291BLASTN svgBLASTP svg
NC_006155:43028264302826432457921754Yersinia pseudotuberculosis IP 32953, complete genome9e-73283BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome2e-70276BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome5e-59238BLASTN svgBLASTP svg
NC_014228:1336466*1336466135833321868Xenorhabdus nematophila ATCC 19061, complete genome5e-59238BLASTN svgBLASTP svg
NC_005126:36304593630459368847858020Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-56230BLASTN svgBLASTP svg
NC_005126:27569842756984277869021707Photorhabdus luminescens subsp. laumondii TTO1, complete genome4e-53218BLASTN svgBLASTP svg
NC_014228:33538963353896338544531550Xenorhabdus nematophila ATCC 19061, complete genome2e-52216BLASTN svgBLASTP svg
NC_008570:1986466*1986466201051824053Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-51212BLASTN svgBLASTP svg
NC_014228:34421593442159346772325565Xenorhabdus nematophila ATCC 19061, complete genome1e-47200BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome9e-42180BLASTN svgBLASTP svg
CP002185:234719*23471925468519967Escherichia coli W, complete genome4e-38168BLASTN svgBLASTP svg
NC_005126:14250014250016059218093Photorhabdus luminescens subsp. laumondii TTO1, complete genome1e-25127BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome2e-24123BLASTN svgBLASTP svg
NC_005126:38120543812054388079068737Photorhabdus luminescens subsp. laumondii TTO1, complete genome7e-24121BLASTN svgBLASTP svg
NC_005126:15490661549066157724728182Photorhabdus luminescens subsp. laumondii TTO1, complete genome7e-24121BLASTN svgBLASTP svg
NC_012962:86929586929589218422890Photorhabdus asymbiotica, complete genome2e-21113BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome1e-19107BLASTN svgBLASTP svg
NC_009832:622969*62296965041627448Serratia proteamaculans 568, complete genome1e-19107BLASTN svgBLASTP svg
NC_015968:4117835*4117835416711149277Enterobacter asburiae LF7a chromosome, complete genome7e-18101BLASTN svgBLASTP svg
NC_005126:48575004857500488024422745Photorhabdus luminescens subsp. laumondii TTO1, complete genome3e-1799.6BLASTN svgBLASTP svg
NC_011149:10775891077589110031022722Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-1799.6BLASTN svgBLASTP svg
NC_012214:33039553303955332359919645Erwinia pyrifoliae Ep1/96, complete genome7e-1591.7BLASTN svgBLASTP svg
NC_012913:1832500*1832500186405931560Aggregatibacter aphrophilus NJ8700, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_002695:26123526123528377222538Escherichia coli O157:H7 str. Sakai, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_002655:26123626123628140820173Escherichia coli O157:H7 EDL933, complete genome1e-1387.7BLASTN svgBLASTP svg
CU928160:25693225693227863921708Escherichia coli IAI1 chromosome, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_020063:31040003104000312597921980Enterobacteriaceae bacterium strain FGI 57, complete genome4e-1385.7BLASTN svgBLASTP svg
NC_012912:1788308*1788308184662758320Dickeya zeae Ech1591, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-1281.8BLASTN svgBLASTP svg
NC_014228:35053203505320352873223413Xenorhabdus nematophila ATCC 19061, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_010102:4745949*4745949476837922431Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,3e-1179.8BLASTN svgBLASTP svg
NC_009792:32259653225965324431718353Citrobacter koseri ATCC BAA-895, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_003143:1059580*1059580109467535096Yersinia pestis CO92, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_003143:16300001630000167609946100Yersinia pestis CO92, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_004088:29663312966331300002833698Yersinia pestis KIM, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_004088:3689000*3689000372277733778Yersinia pestis KIM, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_005810:14677721467772150509937328Yersinia pestis biovar Microtus str. 91001, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_005810:39172543917254395265235399Yersinia pestis biovar Microtus str. 91001, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_008149:28023922802392285367651285Yersinia pestis Nepal516, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_008149:3556999*3556999359064933651Yersinia pestis Nepal516, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_008150:31790331790335159933697Yersinia pestis Antiqua, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_008150:84472784472789009945373Yersinia pestis Antiqua, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_010159:31206423120642314771827077Yersinia pestis Angola, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_013421:4714478*4714478478002665549Pectobacterium wasabiae WPP163, complete genome1e-1077.8BLASTN svgBLASTP svg
NC_015062:13035913035915526724909Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence4e-1075.8BLASTN svgBLASTP svg
NC_021066:601029*60102962413023102Raoultella ornithinolytica B6, complete genome2e-0973.8BLASTN svgBLASTP svg
CP002185:2889656*2889656291209922444Escherichia coli W, complete genome6e-0971.9BLASTN svgBLASTP svg
CP002516:1196000*1196000121818122182Escherichia coli KO11, complete genome6e-0971.9BLASTN svgBLASTP svg
CU928160:2785792*2785792280821622425Escherichia coli IAI1 chromosome, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_006155:3805640*3805640384073735098Yersinia pseudotuberculosis IP 32953, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_010634:3720214*3720214375380933596Yersinia pseudotuberculosis PB1/+, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_020063:33525163352516337629223777Enterobacteriaceae bacterium strain FGI 57, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_008027:4889662*4889662491964529984Pseudomonas entomophila L48, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_009648:3192483*3192483321423721755Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_012912:3853377*3853377389607042694Dickeya zeae Ech1591, complete genome1e-0767.9BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_011751:25683025683028052023691Escherichia coli UMN026 chromosome, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_004578:27974932797493281782820336Pseudomonas syringae pv. tomato str. DC3000, complete genome2e-0663.9BLASTN svgBLASTP svg