Pre_GI: BLASTN Hits

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Query: NC_003198:331314 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 331314, End: 357099, Length: 25786

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006511:25405002540500256809927600Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC029400BLASTN svgBLASTP svg
NC_004631:26159082615908263824422337Salmonella enterica subsp. enterica serovar Typhi Ty2, complete027890BLASTN svgBLASTP svg
NC_006905:32651732651735159925083Salmonella enterica subsp. enterica serovar Choleraesuis str024320BLASTN svgBLASTP svg
NC_011080:33312133312135949426374Salmonella enterica subsp. enterica serovar Newport str. SL254,015620BLASTN svgBLASTP svg
NC_011083:33891033891036299924090Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,013710BLASTN svgBLASTP svg
NC_003197:33208633208635504122956Salmonella typhimurium LT2, complete genome012800BLASTN svgBLASTP svg
NC_011149:30955630955633763728082Salmonella enterica subsp. enterica serovar Agona str. SL483,012580BLASTN svgBLASTP svg
NC_010102:27623042762304278909926796Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,012510BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome1e-159571BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome1e-159571BLASTN svgBLASTP svg
NC_007384:37417083741708376309921392Shigella sonnei Ss046, complete genome1e-159571BLASTN svgBLASTP svg
NC_007384:16968311696831171856121731Shigella sonnei Ss046, complete genome3e-157563BLASTN svgBLASTP svg
NC_009786:43331433316409920769Escherichia coli E24377A plasmid pETEC_80, complete sequence5e-156559BLASTN svgBLASTP svg
NC_011750:3545466*3545466356309917634Escherichia coli IAI39 chromosome, complete genome5e-150539BLASTN svgBLASTP svg
NC_009801:995396995396101946824073Escherichia coli E24377A, complete genome2e-134488BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome2e-134488BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome8e-124452BLASTN svgBLASTP svg
NC_007946:21554542155454218077025317Escherichia coli UTI89, complete genome8e-124452BLASTN svgBLASTP svg
NC_008253:20567342056734207917122438Escherichia coli 536, complete genome8e-124452BLASTN svgBLASTP svg
NC_009792:80833280833283532926998Citrobacter koseri ATCC BAA-895, complete genome8e-124452BLASTN svgBLASTP svg
NC_020181:42194142194144800526065Enterobacter aerogenes EA1509E, complete genome8e-124452BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome5e-119436BLASTN svgBLASTP svg
NC_011149:46774124677412471244835037Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-116428BLASTN svgBLASTP svg
NC_015663:113797137971Enterobacter aerogenes KCTC 2190 chromosome, complete genome2e-109404BLASTN svgBLASTP svg
NC_013956:32733403273340330380130462Pantoea ananatis LMG 20103 chromosome, complete genome3e-102381BLASTN svgBLASTP svg
NC_011083:2847318*2847318291739170074Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,1e-98369BLASTN svgBLASTP svg
NC_003197:2894344*2894344294288048537Salmonella typhimurium LT2, complete genome1e-98369BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome7e-78299BLASTN svgBLASTP svg
NC_020064:3157656*3157656318828830633Serratia marcescens FGI94, complete genome2e-69272BLASTN svgBLASTP svg
NC_020064:79422*7942212524145820Serratia marcescens FGI94, complete genome7e-69270BLASTN svgBLASTP svg
NC_020064:3825916*3825916385292327008Serratia marcescens FGI94, complete genome7e-69270BLASTN svgBLASTP svg
NC_020064:1409596*1409596145680247207Serratia marcescens FGI94, complete genome7e-69270BLASTN svgBLASTP svg
NC_014842:19411194114866829258Pantoea sp. At-9b plasmid pPAT9B05, complete sequence6e-63250BLASTN svgBLASTP svg
NC_009801:3374501*3374501339880324303Escherichia coli E24377A, complete genome2e-62248BLASTN svgBLASTP svg
NC_007414:56508565089199935492Escherichia coli O157:H7 EDL933 plasmid pO157, complete sequence1e-48202BLASTN svgBLASTP svg
NC_002695:53525545352554537663924086Escherichia coli O157:H7 str. Sakai, complete genome1e-36163BLASTN svgBLASTP svg
NC_002655:53825575382557540664224086Escherichia coli O157:H7 EDL933, complete genome1e-36163BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence1e-33153BLASTN svgBLASTP svg
CU928145:3360967*3360967340151440548Escherichia coli 55989 chromosome, complete genome1e-30143BLASTN svgBLASTP svg
NC_004431:4955658*4955658497950623849Escherichia coli CFT073, complete genome1e-30143BLASTN svgBLASTP svg
NC_008563:33321143332114335140519292Escherichia coli APEC O1, complete genome1e-30143BLASTN svgBLASTP svg
NC_011748:3360967*3360967340151440548Escherichia coli 55989, complete genome1e-30143BLASTN svgBLASTP svg
NC_011751:35309543530954356883437881Escherichia coli UMN026 chromosome, complete genome4e-27131BLASTN svgBLASTP svg
NC_002128:35000350006549030491Escherichia coli O157:H7 str. Sakai plasmid pO157, complete4e-27131BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str4e-24121BLASTN svgBLASTP svg
NC_014306:3006028*3006028304213136104Erwinia billingiae Eb661, complete genome6e-1797.6BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_015061:31112113111211313800526795Rahnella sp. Y9602 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_021066:46029246029251915858867Raoultella ornithinolytica B6, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012917:32411963241196329451553320Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010694:3178842*3178842319909920258Erwinia tasmaniensis, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_015224:2095816*2095816211873722922Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,3e-1281.8BLASTN svgBLASTP svg
NC_020209:46439014643901466711323213Pseudomonas poae RE*1-1-14, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_004431:27986827986832229542428Escherichia coli CFT073, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010488:48868488687267123804Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence8e-1073.8BLASTN svgBLASTP svg
NC_014306:4106569*4106569413417327605Erwinia billingiae Eb661, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008253:31613113161311320913747827Escherichia coli 536, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007952:19342491934249195801423766Burkholderia xenovorans LB400 chromosome 2, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_010067:25297502529750259435464605Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete5e-0867.9BLASTN svgBLASTP svg
NC_012779:29570002957000298403927040Edwardsiella ictaluri 93-146, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015061:3840463*3840463391463974177Rahnella sp. Y9602 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020064:35175003517500354133523836Serratia marcescens FGI94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_020064:29603322960332298749027159Serratia marcescens FGI94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013850:4829455*4829455485950430050Klebsiella variicola At-22 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013282:923500*92350094659923100Cronobacter turicensis, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007511:71949371949373920719715Burkholderia sp. 383 chromosome 2, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_012214:2805297*2805297283239127095Erwinia pyrifoliae Ep1/96, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013716:4824541*4824541484830623766Citrobacter rodentium ICC168, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:37084153708415373077822364Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012792:38567038567040991424245Variovorax paradoxus S110 chromosome 2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007005:58822055882205592100338799Pseudomonas syringae pv. syringae B728a, complete genome3e-0661.9BLASTN svgBLASTP svg