Pre_GI: BLASTP Hits

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Query: NC_013410:1152188:1169512 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 1169512, End: 1170855, Length: 1344

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013204:929434:9532219532219545551335Eggerthella lenta DSM 2243, complete genomeNa+/H+ antiporter NhaC4e-127454
NC_014377:1512217:1534279153427915355741296Thermosediminibacter oceani DSM 16646 chromosome, complete genomeputative methionine transporter, NhaC family (TC 2.A.35.1.-)5e-79295
NC_015425:405058:4176384176384189721335Clostridium botulinum BKT015925 chromosome, complete genomeNa+/H+ antiporter family protein6e-78291
NC_012658:1617902:1622342162234216237391398Clostridium botulinum Ba4 str. 657 chromosome, complete genomeNa+/H+ antiporter family protein2e-75283
NC_004557:2677155:2685673268567326870311359Clostridium tetani E88, complete genomeNa+/H+ antiporter2e-71270
NC_015519:924000:9347329347329360271296Tepidanaerobacter sp. Re1 chromosome, complete genomeNa+/H+ antiporter NhaC-like protein3e-70266
NC_013171:1677543:1700217170021717015211305Anaerococcus prevotii DSM 20548, complete genomeNa+/H+ antiporter NhaC2e-67256
NC_017347:2437902:2444305244430524456181314Staphylococcus aureus subsp. aureus T0131 chromosome, completeNa+/H+ antiporter family protein5e-67255
NC_019842:484933:5400765400765413651290Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,Malate-2H(+)/Na(+)-lactate antiporter6e-67254
NC_020410:495184:5355525355525368411290Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative Na+/H+ antiporter3e-66252
NC_020272:3396800:3398220339822033995091290Bacillus amyloliquefaciens IT-45, complete genomeNa(+)/H(+) antiporter nhaC Sodium/proton antiporter4e-66252
NC_003454:2080705:2082039208203920833761338Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeNA+/H+ antiporter NHAC8e-66251
NC_008593:1797000:1800154180015418015271374Clostridium novyi NT, complete genomeNa+/H+ antiporter family protein7e-65248
NC_009615:711125:7175017175017187961296Parabacteroides distasonis ATCC 8503 chromosome, complete genomeNa+/H+ antiporter8e-65248
NC_015164:1158796:1163208116320811645121305Bacteroides salanitronis DSM 18170 chromosome, complete genomeNa+/H+ antiporter NhaC3e-63243
UCMB5137:2054735:2076859207685920781481290Bacillus atrophaeus UCMB-5137putative Na+/H+ antiporter2e-58227
NC_015497:3497680:3516919351691935182501332Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeNa+/H+ antiporter NhaC-like protein4e-58225
NC_007645:1698803:1720380172038017216991320Hahella chejuensis KCTC 2396, complete genomeNa+/H+ antiporter4e-58225
NC_008260:3053775:3058906305890630602521347Alcanivorax borkumensis SK2, complete genomeNa+/H+ antiporter, putative5e-56219
NC_009092:3783000:3783257378325737845881332Shewanella loihica PV-4, complete genomeNa+/H+ antiporter NhaC2e-55216
NC_014364:2562281:2573010257301025743441335Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeNa+/H+ antiporter NhaC8e-55214
NC_002506:207097:2097482097482110911344Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completeNa+/H+ antiporter, putative2e-50200
NC_012580:207025:2096762096762110191344Vibrio cholerae M66-2 chromosome II, complete sequenceNa+/H+ antiporter2e-50200
NC_012667:46432:6250062500638431344Vibrio cholerae MJ-1236 chromosome 2, complete genomemethionine transporter MetT2e-50200
NC_016446:979884:9825239825239838661344Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completehypothetical protein2e-50200
NC_016945:207089:2097282097282110711344Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein2e-50200
NC_006582:1017000:1017468101746810188711404Bacillus clausii KSM-K16, complete genomeNa+:H+ antiporter2e-1377.4
NC_007907:5404608:5421786542178654232311446Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1376.3
NC_010159:1071937:1079454107945410808661413Yersinia pestis Angola, complete genomeNa+/H+ antiporter family protein1e-1275.1
NC_014029:729675:7389487389487403601413Yersinia pestis Z176003 chromosome, complete genomeNa+/H+ antiporter family protein1e-1275.1
NC_017160:676249:6832856832856846971413Yersinia pestis D182038 chromosome, complete genomeNa+/H+ antiporter family protein1e-1275.1
NC_004088:3923804:3933688393368839351391452Yersinia pestis KIM, complete genomehypothetical protein9e-1375.1
NC_008150:3495851:3506589350658935080401452Yersinia pestis Antiqua, complete genomehypothetical protein9e-1375.1
NC_005810:3272765:3278232327823232796831452Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein9e-1375.1
NC_003143:675622:6854006854006868511452Yersinia pestis CO92, complete genomehypothetical protein9e-1375.1
NC_008149:587689:5969305969305983811452Yersinia pestis Nepal516, complete genomemembrane protein9e-1375.1
NC_010465:660207:6656746656746671251452Yersinia pseudotuberculosis YPIII, complete genomeNa+/H+ antiporter NhaC9e-1375.1
NC_017154:671816:6810616810616825121452Yersinia pestis D106004 chromosome, complete genomehypothetical protein9e-1375.1
NC_009708:633054:6385216385216399721452Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeNa+/H+ antiporter family protein1e-1274.7
NC_006155:4062000:4072289407228940737401452Yersinia pseudotuberculosis IP 32953, complete genomeputative Na+/H+ antiporter, NhaC family1e-1274.7
NC_003454:339345:3499903499903515671578Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeNA+/H+ antiporter NHAC2e-1170.9
NC_018870:2479114:2488367248836724898151449Thermacetogenium phaeum DSM 12270 chromosome, complete genomeNa+/H+ antiporter6e-1168.9
NC_018604:1534074:1535271153527115367011431Brachyspira pilosicoli WesB complete genomeputative Na+/H+ antiporter2e-0757.8
NC_009381:460358:4673564673564684651110Yersinia pestis Pestoides F chromosome, complete genome4e-0756.6
NC_010634:4001154:4012848401284840139571110Yersinia pseudotuberculosis PB1/+, complete genomeNa+/H+ antiporter family protein6e-0755.8
NC_007963:3574000:3577282357728235788351554Chromohalobacter salexigens DSM 3043, complete genomeNa+/H+ antiporter NhaC6e-0652.8
NC_013456:3011518:3017418301741830189411524Vibrio sp. Ex25 chromosome 1, complete genomeNa+/H+ antiporter NhaC6e-0652.4