Pre_GI Gene

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Host: NC_016945 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016945:207089 Vibrio cholerae IEC224 chromosome II, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: It was isolated in November of 1994 at the city of Belém/Pa from a stool sample. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2070892085611473hypothetical proteinBLASTP
208550209545996D-lactate dehydrogenaseQuickGO ontologyBLASTP
2097282110711344hypothetical proteinBLASTP
211073211915843hypothetical proteinBLASTP
211981212529549hypothetical proteinBLASTP
2131872142301044guanosine 5-monophosphate oxidoreductaseQuickGO ontologyBLASTP
2145542157051152DNA cytosine-5--methyltransferaseQuickGO ontologyBLASTP
2158292177451917hypothetical proteinBLASTP
2177382188621125hypothetical proteinBLASTP
219805220242438IS1004 transposaseQuickGO ontologyBLASTP
2207472221021356ATP-dependent RNA helicase RhlEQuickGO ontologyBLASTP
2222922236201329anaerobic C4-dicarboxylate transporterQuickGO ontologyBLASTP
223871224701831NAD synthetaseQuickGO ontologyBLASTP
224804225331528nicotinic acid mononucleotide adenylyltransferaseQuickGO ontologyBLASTP
2255982271391542response regulatorQuickGO ontologyBLASTP
2271972291431947sensory box sensor histidine kinaseQuickGO ontologyBLASTP
229393230367975sugar ABC transporter ATPaseQuickGO ontologyBLASTP
2304452320251581hypothetical proteinBLASTP