Pre_GI Gene

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Host: NC_012667 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012667:46432 Vibrio cholerae MJ-1236 chromosome 2, complete genome

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
46432479731542response regulatorQuickGO ontologyBLASTP
4824048767528nicotinic acid mononucleotide adenylyltransferaseQuickGO ontologyBLASTP
4884349700858NAD synthetaseQuickGO ontologyBLASTP
49951512791329anaerobic C4-dicarboxylate transporterQuickGO ontologyBLASTP
51469528241356ATP-dependent RNA helicase RhlEQuickGO ontologyBLASTP
5332953766438IS1004 transposaseQuickGO ontologyBLASTP
5383454712879hypothetical proteinBLASTP
54709558331125hypothetical proteinBLASTP
55826577421917hypothetical proteinBLASTP
5786658837972hypothetical proteinBLASTP
59341603841044guanosine 5-monophosphate oxidoreductaseQuickGO ontologyBLASTP
6104261590549hypothetical proteinBLASTP
6165662498843potassium channel VIC familyQuickGO ontologyBLASTP
62500638431344methionine transporter MetTQuickGO ontologyBLASTP
6402665021996D-lactate dehydrogenaseQuickGO ontologyBLASTP
65010664941485YjeF proteinQuickGO ontologyBLASTP
6653266978447hypothetical proteinBLASTP
66978679821005chemotaxis protein CheC -- inhibitor of MCP methylationQuickGO ontologyBLASTP
6806968347279hypothetical protein
6842568556132hypothetical protein
6858268959378NADHubiquinone oxidoreductase subunit 2QuickGO ontology
6934769592246hypothetical proteinBLASTP
6993370142210cold shock protein CspEQuickGO ontologyBLASTP