Pre_GI: BLASTP Hits

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Query: NC_010067:1300606:1310560 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 1310560, End: 1310730, Length: 171

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020064:1409596:142179314217931422116324Serratia marcescens FGI94, complete genomehypothetical protein1e-0858.2
NC_012779:2127542:214378521437852144585801Edwardsiella ictaluri 93-146, complete genometransposase InsF for insertion sequence IS3A/B/C/D/E/fA3e-0857.4
NC_004337:3590323:381087238108723811264393Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-0857
NC_013361:3287671:330811433081143308494381Escherichia coli O26:H11 str. 11368 chromosome, complete genome7e-0855.8
NC_008253:296500:303560303560304414855Escherichia coli 536, complete genometransposase8e-0855.8
NC_012214:1650523:166907016690701669924855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, orf B2e-0754.7
NC_012214:2221702:226107322610732261927855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probale orf B2e-0754.7
NC_012214:1650523:165905116590511659905855Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, orf B2e-0754.7
NC_012214:1355500:136944813694481370302855Erwinia pyrifoliae Ep1/96, complete genomeTransposase, probable orf A2e-0754.7
NC_012214:1355500:136747713674771368205729Erwinia pyrifoliae Ep1/96, complete genomeTransposase IS3/IS911, probable orf B2e-0754.7
NC_004431:1166568:117462811746281175380753Escherichia coli CFT073, complete genomeTransposase insF for insertion sequence IS3A/B/C/D/E/fA1e-0754.7
NC_015761:2373967:238093723809372381320384Salmonella bongori NCTC 12419, complete genome2e-0754.3
NC_020064:3998715:406440140644014065255855Serratia marcescens FGI94, complete genometransposase3e-0753.9
NC_011294:346915:348718348718349128411Salmonella enterica subsp. enterica serovar Enteritidis str7e-0752.8
NC_013361:3651150:366508336650833665547465Escherichia coli O26:H11 str. 11368 chromosome, complete genome8e-0752.4
NC_004741:2741971:275188527518852752313429Shigella flexneri 2a str. 2457T, complete genomeIS3 orfB8e-0752.4
NC_011205:371001:372687372687373214528Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transposase8e-0752.4
NC_013716:5201097:523569452356945236560867Citrobacter rodentium ICC168, complete genomeIS3 transposase B1e-0652
NC_000913:558920:566361566361567227867Escherichia coli K12, complete genomeDLP12 prophage; IS3 element protein InsF1e-0652
CP002185:4035502:405304040530404053906867Escherichia coli W, complete genomeIS3 Transposase ORF21e-0652
NC_000913:303719:314811314811315677867Escherichia coli K12, complete genomeIS3 element protein InsF1e-0652
NC_010473:498252:505693505693506559867Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; IS3 element protein InsF1e-0652
AC_000091:303719:314811314811315677867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF1e-0652
AC_000091:558920:566361566361567227867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF1e-0652
AC_000091:1083798:109469710946971095563867Escherichia coli W3110 DNA, complete genomeIS3 element protein InsF1e-0652
NC_010473:279948:290361290361291227867Escherichia coli str. K-12 substr. DH10B, complete genomeIS3 element protein InsF1e-0652
CP002516:44744:521675216753033867Escherichia coli KO11, complete genomeIntegrase catalytic region1e-0652
NC_000913:1087062:109349810934981094364867Escherichia coli K12, complete genomeIS3 element protein InsF1e-0652
CU928159:30700:341503415035016867Escherichia coli str. 55989 plasmid 55989p, complete genometransposase ORF B, IS31e-0652
CP002516:1165726:117256111725611173427867Escherichia coli KO11, complete genomeIntegrase catalytic region1e-0652
NC_010468:2809125:281459028145902815456867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region1e-0652
CP002185:2919752:293243029324302933296867Escherichia coli W, complete genomeIS3 Transposase ORF21e-0652
NC_011083:4547825:458547045854704586336867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ISEc16, orfB1e-0652
NC_012759:461680:469121469121469987867Escherichia coli BW2952 chromosome, complete genomeIS3 element protein InsF1e-0652
NC_011415:3006794:302033130203313021197867Escherichia coli SE11 chromosome, complete genometransposase1e-0652
NC_010498:2278306:228095222809522281785834Escherichia coli SMS-3-5, complete genome1e-0652
NC_008258:2905413:291114829111482912014867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF21e-0652
NC_017328:3088907:314054631405463141412867Shigella flexneri 2002017 chromosome, complete genomeIS3 orfB1e-0652
NC_004337:3049118:310217931021793103045867Shigella flexneri 2a str. 301, complete genomeIS3 ORF21e-0652
NC_004741:3041294:309166830916683092534867Shigella flexneri 2a str. 2457T, complete genomeIS3 orfB1e-0652
NC_017328:2785309:279613527961352797001867Shigella flexneri 2002017 chromosome, complete genomeIS3 ORF21e-0652
NC_017328:1075535:109566610956661096532867Shigella flexneri 2002017 chromosome, complete genomeIS3, transposase orfB1e-0652
NC_012967:1593101:160827816082781609144867Escherichia coli B str. REL606 chromosome, complete genomeputative transposase for IS31e-0652
NC_013364:3701895:371893437189343719800867Escherichia coli O111:H- str. 11128, complete genomeputative IS3 transposase InsF1e-0652
NC_016902:1165726:117256111725611173427867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit1e-0652
NC_016902:44744:521675216753033867Escherichia coli KO11FL chromosome, complete genomeintegrase catalytic subunit1e-0652
NC_004337:2747917:275725327572532758119867Shigella flexneri 2a str. 301, complete genomeIS3 ORF21e-0652
NC_009801:3013838:302677030267703027636867Escherichia coli E24377A, complete genomeIS3, transposase orfB1e-0652
NC_011205:1227373:123641812364181236957540Salmonella enterica subsp. enterica serovar Dublin str. CT_020218532e-0651.6
NC_011740:2859933:286084028608402861706867Escherichia fergusonii ATCC 35469, complete genomeIS3 element protein InsF1e-0651.6
NC_016831:1865681:187488518748851875376492Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-0651.6
NC_008258:1076922:108889210888921089758867Shigella flexneri 5 str. 8401, complete genomeIS3 ORF21e-0651.6
NC_010468:4059436:406845740684574069323867Escherichia coli ATCC 8739, complete genomeIntegrase catalytic region1e-0651.6
NC_004337:1065609:106951210695121070378867Shigella flexneri 2a str. 301, complete genomeIS3 ORF21e-0651.6
NC_012947:2189533:219422521942252195091867Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeIntegrase catalytic region1e-0651.6
NC_011149:1110642:112259011225901123456867Salmonella enterica subsp. enterica serovar Agona str. SL483,ISEc16, orfB2e-0651.2
NC_003197:2894344:291097729109772911843867Salmonella typhimurium LT2, complete genomeputative transposase3e-0650.8
NC_011083:2847318:288548328854832886349867Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase InsF for insertion sequence IS3A/B/C/D/E/fA3e-0650.8
NC_016856:2896630:293121229312122932078867Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transposase3e-0650.8
NC_016863:2844883:287946528794652880331867Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transposase3e-0650.8
NC_016860:2917910:293454329345432935409867Salmonella enterica subsp. enterica serovar Typhimurium strIS3 transposase InsF3e-0650.8
NC_011149:4474012:448409844840984484304207Salmonella enterica subsp. enterica serovar Agona str. SL483,4e-0650.4
NC_011741:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF4e-0650.1
CU928160:2091249:211327021132702114136867Escherichia coli IAI1 chromosome, complete genomeIS3 element protein InsF4e-0650.1
NC_012125:4481808:449188744918874492195309Salmonella enterica subsp. enterica serovar Paratyphi C strainTransposase insF for insertion sequence IS3A/B/C/D6e-0649.3
NC_006905:4486433:449651244965124496820309Salmonella enterica subsp. enterica serovar Choleraesuis strTransposase insF for insertion sequence IS3A/B/C/D6e-0649.3