Pre_GI: BLASTP Hits

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Query: NC_009708:372422:377928 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 377928, End: 381461, Length: 3534

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010465:429095:4346014346014381343534Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein IcmF02417
NC_006155:4302826:4315540431554043190733534Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein02414
NC_010634:4234932:4246637424663742501703534Yersinia pseudotuberculosis PB1/+, complete genometype VI secretion protein IcmF02411
NC_003143:4006884:4012390401239040159233534Yersinia pestis CO92, complete genomehypothetical protein02407
NC_009381:222735:2282322282322317653534Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein02407
NC_014029:3958811:3964317396431739678503534Yersinia pestis Z176003 chromosome, complete genomehypothetical protein02407
NC_017154:3898925:3904431390443139079643534Yersinia pestis D106004 chromosome, complete genomehypothetical protein02407
NC_017168:1631052:1636558163655816400913534Yersinia pestis A1122 chromosome, complete genomehypothetical protein02407
NC_017265:4265659:4278317427831742818503534Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein02407
NC_012962:293976:3021943021943057393546Photorhabdus asymbiotica, complete genomehypothetical protein01727
NC_013892:274297:2849322849322885013570Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein01681
NC_005126:349658:3824313824313859763546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01641
NC_005126:349658:3568883568883604333546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein01636
NC_014228:4331327:4338297433829743419023606Xenorhabdus nematophila ATCC 19061, complete genomeConserved hypothetical protein (probable component of SST VI cluster)01622
CP002516:3863932:3866111386611138696353525Escherichia coli KO11, complete genometype VI secretion protein IcmF01340
CP002185:234719:2422682422682457923525Escherichia coli W, complete genomeIcmF-like protein01340
NC_016902:3863932:3866111386611138696353525Escherichia coli KO11FL chromosome, complete genometype VI secretion protein IcmF01340
NC_011149:1077589:1095358109535810988193462Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion protein IcmF01322
NC_011740:1991941:2010341201034120138623522Escherichia fergusonii ATCC 35469, complete genomeIcmF-like protein01321
NC_011274:1094379:1116332111633211198533522Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein01318
NC_011205:1186097:1208040120804012115013462Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein01316
NC_016831:1905289:1905289190528919087503462Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein01315
NC_011294:1085447:1107409110740911100272619Salmonella enterica subsp. enterica serovar Enteritidis str01090
NC_008570:2014151:2014151201415120176363486Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeImcF family protein01066
NC_013421:1173051:1173051117305111765483498Pectobacterium wasabiae WPP163, complete genometype VI secretion protein IcmF01018
NC_015968:4117835:4135929413592941395883660Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein IcmF0985
NC_008740:4109000:4125749412574941293333585Marinobacter aquaeolei VT8, complete genometranscriptional regulator, Fis family0775
NC_012913:1832500:1849033184903318525303498Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion protein IcmF6e-172605
NC_004605:1092476:1095070109507010985883519Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein2e-93345
NC_009439:101174:1011741011741047133540Pseudomonas mendocina ymp, complete genomeImcF domain-containing protein4e-86320
NC_004578:6138669:6157343615734361609213579Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-82308
NC_018868:973379:9733799733799769153537Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein2e-82308
NC_007645:4423507:4440744444074444442023459Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-81304
NC_020064:2921809:2921809292180929254533645Serratia marcescens FGI94, complete genometype VI secretion protein IcmF4e-73277
NC_020829:809457:8248258248258283613537Pseudomonas denitrificans ATCC 13867, complete genometype VI secretion protein IcmF5e-70266
NC_016816:1823127:1823127182312718267533627Pantoea ananatis LMG 5342, complete genometype VI secretion protein IcmF6e-69263
NC_018000:2964500:2989499298949929930293531Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein6e-67256
NC_014306:679888:6798886798886835083621Erwinia billingiae Eb661, complete genomeType VI secretion system, IcmF4e-64247
NC_017192:2216914:2230436223043622338013366Arcobacter sp. L, complete genomehypothetical protein5e-60233
NC_008313:691692:7102487102487140693822Ralstonia eutropha H16 chromosome 1, complete sequenceprotein of unknown function, ImcF-related2e-57224
NC_011988:1036618:1056348105634810598423495Agrobacterium vitis S4 chromosome 2, complete genomeIcmF family protein3e-53211
NC_010086:20876:3551535515394683954Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion protein IcmF8e-50199
NC_010805:2432167:2435836243583624397893954Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein8e-50199
NC_007511:2072838:2078291207829120822893999Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein5e-48193
NC_014355:1865003:1882727188272718863563630Candidatus Nitrospira defluvii, complete genomehypothetical protein3e-45184
NC_007511:1094050:1110148111014811142574110Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein2e-44181
NC_008391:271254:2874242874242915214098Burkholderia cepacia AMMD chromosome 2, complete sequenceImcF domain protein9e-44179
NC_014323:816027:8334198334198372943876Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein1e-43179
NC_010805:1576735:1580085158008515841854101Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein2e-43178
NC_010086:871723:8911198911198952194101Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion protein IcmF2e-43178
NC_009802:114749:1427701427701462583489Campylobacter concisus 13826, complete genome1e-40169
NC_013282:1256769:1280666128066612844513786Cronobacter turicensis, complete genomehypothetical protein1e-38162
NC_014323:4619344:4619344461934446231443801Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein3e-38161
NC_004917:241053:2432372432372467913555Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein2e-36155
NC_007005:5882205:5887089588708958895812493Pseudomonas syringae pv. syringae B728a, complete genomeOmpA/MotB2e-32142
NC_005773:106000:1406801406801431722493Pseudomonas syringae pv. phaseolicola 1448A, complete genomeOmpA domain protein2e-31138
NC_005773:106000:1441241441241480443921Pseudomonas syringae pv. phaseolicola 1448A, complete genomeImcF-related family1e-25119
NC_007510:409843:4438784438784478253948Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein3e-25118
NC_011149:1077589:109179310917931092053261Salmonella enterica subsp. enterica serovar Agona str. SL483,Pmt11e-23113
NC_007005:5882205:5882205588220558861373933Pseudomonas syringae pv. syringae B728a, complete genomeImcF-related:Protein of unknown function DUF12152e-23112
NC_010084:3173757:3173757317375731777043948Burkholderia multivorans ATCC 17616 chromosome 1, completetype VI secretion protein IcmF3e-23111
NC_014931:6031645:6031645603164560354903846Variovorax paradoxus EPS chromosome, complete genometype VI secretion protein IcmF1e-22109
NC_003296:941920:9611259611259650663942Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN4e-20101
NC_014310:811977:8415608415608454893930Ralstonia solanacearum PSI07 megaplasmid, complete sequencesecretion system protein3e-20101
NC_014733:1223359:1241633124163312437472115Methylovorus sp. MP688 chromosome, complete genometype VI secretion protein icmf7e-20100
NC_011283:942594:9464689464689498033336Klebsiella pneumoniae 342 chromosome, complete genomeImcF domain-containing protein4e-1997.8
NC_008563:3119284:3133547313354731368853339Escherichia coli APEC O1, complete genomehypothetical protein1e-1690.1
NC_017060:125480:1401031401031435193417Rahnella aquatilis HX2 plasmid PRA1, complete sequenceImcF domain-containing protein7e-1687
NC_015062:130359:1432731432731466893417Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceImcF domain protein7e-1687
NC_010804:324396:3470683470683501543087Burkholderia multivorans ATCC 17616 chromosome 1, complete7e-1687
NC_009648:3476000:3487423348742334905003078Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-1586.7
NC_009436:3117661:3154619315461931579033285Enterobacter sp. 638, complete genomeImcF domain-containing protein3e-1585.1
NC_016612:5600177:5603309560330956067283420Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein3e-1482
NC_007348:2011957:2025768202576820292383471Ralstonia eutropha JMP134 chromosome 2, complete sequenceImcF-related:Protein of unknown function DUF12156e-1480.9
NC_013282:2026083:2050468205046820537793312Cronobacter turicensis, complete genomehypothetical protein7e-1480.5
NC_016845:3238507:3240404324040432438143411Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein9e-1480.1
NC_009648:2465613:2467510246751024709203411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-1379.3
NC_011283:2103500:2116315211631521192812967Klebsiella pneumoniae 342 chromosome, complete genomeImcF-related family protein1e-1379.3
NC_014837:3766426:3791881379188137952373357Pantoea sp. At-9b chromosome, complete genomeImcF domain-containing protein3e-1378.2
NC_005126:3812054:3830821383082138341713351Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-1377.8
NC_010067:2529750:2532006253200625353773372Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-1276.3
NC_012731:3193880:3195777319577731991933417Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein3e-1275.1
NC_005126:3812054:3819697381969738230683372Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein5e-1274.3
NC_009778:1956225:1976281197628119776511371Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1173.6
NC_005126:3812054:3843641384364138470123372Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-1273.6
NC_007347:1:2498224982285963615Ralstonia eutropha JMP134 chromosome 1, complete sequenceImcF-related:Protein of unknown function DUF12151e-1173.2
NC_005126:4919689:4927191492719149305503360Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-1172.8
NC_009255:1250939:1271735127173512752893555Burkholderia vietnamiensis G4 chromosome 2, complete sequenceImcF domain-containing protein3e-1171.6
NC_009255:2044291:2047201204720120507283528Burkholderia vietnamiensis G4 chromosome 2, complete sequenceImcF domain-containing protein4e-1171.2
NC_015057:30743:3074330743341293387Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequenceImcF domain protein2e-1069.3
NC_010501:3575726:3580163358016335835073345Pseudomonas putida W619, complete genomeImcF domain protein4e-1068.2
NC_014121:1822895:1834869183486918383423474Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein ImpL5e-1067.8
NC_010552:592154:6071386071386109563819Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceprotein of unknown function DUF12151e-0966.2
NC_010804:324396:3496073496073510161410Burkholderia multivorans ATCC 17616 chromosome 1, complete2e-0965.9
NC_016612:4823529:4823529482352948269993471Klebsiella oxytoca KCTC 1686 chromosome, complete genometype VI secretion system protein ImpL2e-0965.9
NC_012721:710887:7242107242107277733564Burkholderia glumae BGR1 chromosome 2, complete genomeImcF-related protein2e-0965.9
NC_014118:1171411:1172998117299811765823585Burkholderia sp. CCGE1002 chromosome chromosome 2, completeImcF domain protein4e-0964.7
NC_013956:4579759:4579759457975945832923534Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein2e-0862.4
NC_012962:4427000:4437011443701144403073297Photorhabdus asymbiotica, complete genomehypothetical protein4e-0861.6
NC_012721:240000:2571702571702606913522Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein4e-0861.6
NC_012721:1395417:1398827139882714023513525Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein3e-0861.6
NC_012962:2639500:2648526264852626518913366Photorhabdus asymbiotica, complete genomesimilar to putative membrane protein of y. pestis7e-0757.4
NC_012731:2302974:2318423231842323219263504Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein7e-0757.4
NC_004088:2966331:2966331296633129697533423Yersinia pestis KIM, complete genomehypothetical protein2e-0655.5
NC_008149:2802392:2802392280239228058143423Yersinia pestis Nepal516, complete genomemembrane protein2e-0655.5
NC_009381:1682000:1683661168366116870833423Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-0655.5
NC_017168:3977767:3977767397776739811893423Yersinia pestis A1122 chromosome, complete genomehypothetical protein2e-0655.5
NC_017265:2586729:2586729258672925901513423Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein2e-0655.5
NC_010465:2820500:2847223284722328506453423Yersinia pseudotuberculosis YPIII, complete genomeImcF domain protein2e-0655.5
NC_009708:2788855:2820654282065428240763423Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein3e-0655.1
NC_009648:1487692:1505225150522515085993375Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein5e-0654.3
NC_015963:117178:1245971245971280313435Enterobacter asburiae LF7a plasmid pENTAS01, complete sequencehypothetical protein7e-0653.9