Pre_GI: BLASTP Hits

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Query: NC_007613:4403070:4422589 Shigella boydii Sb227, complete genome

Start: 4422589, End: 4423383, Length: 795

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012759:4467288:448531644853164486218903Escherichia coli BW2952 chromosome, complete genomeminor component of type 1 fimbriae4e-150530
NC_011751:5070597:508816750881675089069903Escherichia coli UMN026 chromosome, complete genomeminor component of type 1 fimbriae4e-150530
NC_000913:4528278:454683145468314547733903Escherichia coli K12, complete genomeminor component of type 1 fimbriae4e-150530
AC_000091:4534935:455348845534884554390903Escherichia coli W3110 DNA, complete genomeminor component of type 1 fimbriae4e-150530
NC_004337:4374500:437473343747334375635903Shigella flexneri 2a str. 301, complete genomeminor fimbrial subunit, D-mannose specific adhesin9e-150529
CU928160:4570498:460945046094504610352903Escherichia coli IAI1 chromosome, complete genomeminor component of type 1 fimbriae9e-150529
NC_004741:4364235:436582943658294366731903Shigella flexneri 2a str. 2457T, complete genomeminor fimbrial subunit, D-mannose specific adhesin9e-150529
NC_010498:4930649:495343149534314954333903Escherichia coli SMS-3-5, complete genomeprotein FimH9e-150529
CP002185:4791811:481124948112494812151903Escherichia coli W, complete genomeputative fimbrial adhesin protein9e-150529
NC_008258:4345400:434540043454004346302903Shigella flexneri 5 str. 8401, complete genomeFimH protein precursor9e-150529
CP002516:4199133:420071942007194201621903Escherichia coli KO11, complete genomeFimH mannose-binding protein9e-150529
NC_011353:5455224:547734754773475478249903Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprotein FimH9e-150529
NC_011741:4570498:460945046094504610352903Escherichia coli IAI1 chromosome, complete genomeminor component of type 1 fimbriae9e-150529
NC_017328:4417000:441717944171794418081903Shigella flexneri 2002017 chromosome, complete genomeminor fimbrial subunit, D-mannose specific adhesin9e-150529
NC_016902:4199133:420071942007194201621903Escherichia coli KO11FL chromosome, complete genomeFimH mannose-binding protein9e-150529
NC_016822:4889656:491082949108294911731903Shigella sonnei 53G, complete genomeFimH mannose-binding protein9e-150529
NC_013941:5219841:524198052419805242882903Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeadhesin9e-150529
NC_013364:5255700:528026952802695281171903Escherichia coli O111:H- str. 11128, complete genomeminor component FimH of type 1 fimbriae9e-150529
NC_013008:5411285:543340854334085434310903Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeminor fimbrial subunit, D-mannose specific adhesin9e-150529
NC_012967:4510393:452972245297224530624903Escherichia coli B str. REL606 chromosome, complete genomeminor component of type 1 fimbriae2e-149527
NC_012947:3883484:388348438834843884386903Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeFimH mannose-binding domain protein2e-149527
NC_002695:5381576:540369954036995404601903Escherichia coli O157:H7 str. Sakai, complete genomeD-mannose specific adhesin3e-149527
NC_011750:4978000:499626149962614997163903Escherichia coli IAI39 chromosome, complete genomeminor component of type 1 fimbriae8e-149526
NC_008253:4817864:485403648540364854947912Escherichia coli 536, complete genomeFimH protein precursor7e-149526
CP002797:4656327:467677346767734677675903Escherichia coli NA114, complete genomeMannose-specific adhesin FimH4e-149526
NC_009801:4882684:490582749058274906729903Escherichia coli E24377A, complete genomeprotein FimH1e-148525
NC_004431:5123325:514352951435295144440912Escherichia coli CFT073, complete genomeFimH protein precursor2e-148525
NC_011742:4873351:489163148916314892533903Escherichia coli S88 chromosome, complete genomeminor component of type 1 fimbriae2e-148525
NC_007946:4875997:491355549135554914457903Escherichia coli UTI89, complete genometype 1 fimbiral adhesin FimH2e-148525
NC_013361:5580741:559732355973235598225903Escherichia coli O26:H11 str. 11368 chromosome, complete genomeminor component FimH of type 1 fimbriae2e-147521
NC_011745:5114500:5131367513136751331031737Escherichia coli ED1a chromosome, complete genomeouter membrane usher protein FimD/type 1 fimbriae minor component9e-131466
NC_010694:3178842:318929431892943190208915Erwinia tasmaniensis, complete genomeMinor fimbrial subunit, D-mannose specific adhesin (FimH)5e-89327
NC_002655:1966464:197949319794931980407915Escherichia coli O157:H7 EDL933, complete genomeputative adhesin; similar to FimH protein4e-58224
NC_002695:2091890:210806521080652108979915Escherichia coli O157:H7 str. Sakai, complete genomeputative adhesin4e-58224
NC_011353:2004800:202266620226662023580915Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeFimH-like protein4e-58224
NC_013008:2007228:202164220216422022556915Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeF9 fimbriae adhesin4e-58224
NC_013941:1894496:191236319123631913277915Escherichia coli O55:H7 str. CB9615 chromosome, complete genometranscriptional regulator BolA4e-58224
NC_010468:2345781:235613223561322357046915Escherichia coli ATCC 8739, complete genomeFimH mannose-binding domain protein1e-57223
AC_000091:1574000:158853415885341589448915Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein1e-57223
NC_010473:1661000:167543916754391676353915Escherichia coli str. K-12 substr. DH10B, complete genomepredicted fimbrial-like adhesin protein1e-57223
NC_009800:1589000:160364316036431604557915Escherichia coli HS, complete genomeprotein FimH homolog1e-57223
NC_016902:2395578:240919424091942410108915Escherichia coli KO11FL chromosome, complete genomeFimH mannose-binding protein1e-57223
NC_011741:1579375:159378815937881594702915Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like exported adhesin protein1e-57223
CP002185:1681327:169574016957401696654915Escherichia coli W, complete genomepredicted fimbrial-like adhesin protein1e-57223
CU928160:1579375:159378815937881594702915Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like exported adhesin protein1e-57223
CP002516:2395578:240919424091942410108915Escherichia coli KO11, complete genomeFimH mannose-binding protein1e-57223
NC_000913:1570431:158484415848441585758915Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein1e-57223
NC_012759:1462490:147690314769031477817915Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein1e-57223
NC_012947:2228235:223916822391682240082915Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeFimH mannose-binding domain protein1e-57223
NC_011415:1669484:168389716838971684811915Escherichia coli SE11 chromosome, complete genomeputative fimbrial protein9e-58223
CU928145:1684777:169919016991901700104915Escherichia coli 55989 chromosome, complete genomeputative fimbrial-like exported adhesin protein9e-58223
NC_009801:1678790:169665616966561697570915Escherichia coli E24377A, complete genomeprotein FimH homolog9e-58223
NC_011748:1684777:169919016991901700104915Escherichia coli 55989, complete genomeputative fimbrial-like exported adhesin protein9e-58223
NC_013353:1711656:172952417295241730438915Escherichia coli O103:H2 str. 12009, complete genomefimbrial-like adhesin protein1e-57223
AP010958:1711656:172952417295241730438915Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted fimbrial-like adhesin protein1e-57223
NC_013364:1902761:192062719206271921541915Escherichia coli O111:H- str. 11128, complete genomeputative fimbrial-like adhesin protein1e-57223
NC_013361:2047170:206503220650322065946915Escherichia coli O26:H11 str. 11368 chromosome, complete genomefimbrial-like adhesin protein1e-57223
NC_012967:1546000:156077115607711561685915Escherichia coli B str. REL606 chromosome, complete genomeputative fimbrial-like adhesin protein1e-57223
NC_007384:1696831:170179017017901702704915Shigella sonnei Ss046, complete genomeputative adhesin2e-57222
NC_011601:1675000:168947116894711690385915Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomefimbrial protein-like protein5e-57221
NC_008563:1620943:163536116353611636275915Escherichia coli APEC O1, complete genomeputative Fml fimbrial adhesin FmlD precursor4e-57221
NC_007946:1632025:164644316464431647357915Escherichia coli UTI89, complete genomeputative Fml fimbrial adhesin FmlD precursor4e-57221
NC_010498:1659328:166439916643991665313915Escherichia coli SMS-3-5, complete genomeprotein FimH-like protein4e-57221
NC_011751:1770376:178478917847891785703915Escherichia coli UMN026 chromosome, complete genomeputative fimbrial-like exported adhesin protein4e-57221
NC_011750:1849561:186398118639811864895915Escherichia coli IAI39 chromosome, complete genomeputative fimbrial-like exported adhesin protein4e-57221
NC_004431:1754627:177249817724981773412915Escherichia coli CFT073, complete genomeHypothetical fimbrial-like protein ydeQ precursor9e-57220
CP002797:1591000:159734315973431598257915Escherichia coli NA114, complete genomeFimbrial-like protein3e-56218
NC_007606:1515403:151919515191951519872678Shigella dysenteriae Sd197, complete genomeputative adhesin2e-38159
NC_004431:1166568:1193817119381711948271011Escherichia coli CFT073, complete genomeF1C Putative fimbrial adhesin precursor5e-30131
NC_008253:296500:316986316986317885900Escherichia coli 536, complete genomeF1C putative fimbrial adhesin precursor3e-29128
NC_011742:1574036:158845415884541588909456Escherichia coli S88 chromosome, complete genome3e-25115
NC_015567:1206727:122183612218361222792957Serratia sp. AS9 chromosome, complete genomeFimH mannose-binding protein8e-1580.9
NC_015566:1206500:122165112216511222607957Serratia sp. AS12 chromosome, complete genomeFimH mannose-binding protein8e-1580.9