Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1372791 Shigella boydii Sb227, complete genome

Start: 1372791, End: 1373354, Length: 564

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:1353500:137222913722291372762534Shigella boydii Sb227, complete genomeputative tail fiber assembly protein8e-50196
NC_011094:2115750:212749021274902128065576Salmonella enterica subsp. enterica serovar Schwarzengrund strtail fiber assembly protein1e-31135
NC_010102:931055:940063940063940638576Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-31135
NC_011205:2137696:214882021488202149389570Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail fiber assembly protein1e-30132
NC_011294:2009388:202051320205132021082570Salmonella enterica subsp. enterica serovar Enteritidis strphage tail protein1e-30132
NC_016856:2085283:209563220956322096201570Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative tail fiber assembly protein1e-30132
NC_016863:2029340:204382420438242044393570Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein1e-30132
NC_017046:2026672:204115620411562041725570Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage tail protein1e-30132
NC_016810:2027311:204179520417952042394600Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage tail protein1e-30132
NC_007712:1182518:119294511929451193556612Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-28124
NC_012751:899394:915111915111915647537Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage tail assembly chaperone7e-22103
NC_016857:2027311:204179520417952042121327Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tail fiber assembly protein1e-21102
NC_010102:1829357:184176318417631842170408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1995.5
NC_006905:2355290:235775923577592358163405Salmonella enterica subsp. enterica serovar Choleraesuis strbacteriophage tail fiber assembly protein (pseudogene)3e-1994.7
NC_003198:4453457:448272144827214483128408Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail fibre protein3e-1994.7
NC_010102:1779707:180070718007071801114408Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1893.2
NC_011740:621408:625989625989626549561Escherichia fergusonii ATCC 35469, complete genomehypothetical protein from phage origin9e-1579.7
NC_011274:1299475:130654113065411307110570Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91phage tail fiber assembly protein7e-1270.1
NC_011205:1391971:139546013954601396029570Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage tail assembly protein7e-1270.1
NC_011205:1107998:111738411173841117965582Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail fiber assembly like-protein2e-1168.9
NC_011294:1006630:101675710167571017338582Salmonella enterica subsp. enterica serovar Enteritidis strphage tail fiber assembly protein2e-1168.9
NC_011294:1220526:124264112426411242934294Salmonella enterica subsp. enterica serovar Enteritidis str2e-1168.9
NC_004631:685357:703886703886704341456Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1168.9
NC_003198:2297837:230037223003722300827456Salmonella enterica subsp. enterica serovar Typhi str. CT18,bacteriophage tail fiber assembly protein (pseudogene)2e-1168.9
NC_011274:2325840:232854423285442328834291Salmonella enterica subsp. enterica serovar Gallinarum str. 287/913e-1168.2
NC_008258:269806:274041274041274544504Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-1065.5
NC_011094:688626:688626688626689144519Salmonella enterica subsp. enterica serovar Schwarzengrund strbacteriophage tail protein4e-1064.3
NC_011080:1166951:117352511735251174052528Salmonella enterica subsp. enterica serovar Newport str. SL254,caudovirales tail fibre assembly protein5e-1064.3
NC_003198:1867456:188947118894711889989519Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage tail protein5e-1063.9
NC_014228:3282500:331458733145873315018432Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein6e-1063.9
NC_006905:1342474:134886413488641349382519Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical prophage protein1e-0962.8
NC_004337:309833:324465324465324899435Shigella flexneri 2a str. 301, complete genomeputative phage tail fibre protein2e-0962
NC_012962:4942000:494418649441864944638453Photorhabdus asymbiotica, complete genometail fiber assembly protein homolog from lambdoid prophage dlp122e-0961.6
NC_016856:1326503:132894413289441329528585Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein3e-0858.2
NC_011080:2722492:273336927333692733947579Salmonella enterica subsp. enterica serovar Newport str. SL254,phage tail assembly protein4e-0857.8
NC_003197:2720726:273333727333372733915579Salmonella typhimurium LT2, complete genomephage tail assembly-like protein4e-0857.8
NC_016810:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium strDNA Binding protein4e-0857.8
NC_016856:2773995:278486627848662785444579Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage tail assembly-like protein4e-0857.8
NC_016857:2719779:273102427310242731602579Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage tail assembly-like protein4e-0857.8
NC_016860:2716152:272874527287452729323579Salmonella enterica subsp. enterica serovar Typhimurium strphage tail assembly protein4e-0857.8
NC_016863:2721826:273307127330712733649579Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage tail assembly-like protein4e-0857.8
NC_017046:2717810:273040327304032730981579Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA Binding protein4e-0857.8
NC_013892:992811:101244310124431012859417Xenorhabdus bovienii SS-2004 chromosome, complete genomeCPS-53 (KpLE1) prophage; tail fiber assembly6e-0753.9
NC_011083:2375061:238241423824142382941528Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative phage tail fiber assembly protein8e-0753.5
NC_010102:683444:710448710448710975528Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-0753.5
NC_003197:2327474:233483423348342335361528Salmonella typhimurium LT2, complete genomeputative phage tail fiber assembly protein8e-0753.5
NC_016810:2325190:233255023325502333077528Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage tail fiber assembly protein8e-0753.5
NC_016856:2379027:238638723863872386914528Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative phage tail fiber assembly protein8e-0753.5
NC_016857:2325190:233255023325502333077528Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage tail fiber assembly protein8e-0753.5
NC_016860:2323017:233037723303772330904528Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-0753.5
NC_016863:2324293:233457923345792335106528Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage tail fiber assembly protein8e-0753.5
NC_017046:2324554:233191423319142332441528Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage tail fiber assembly protein8e-0753.5
NC_013941:733286:740261740261740845585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeTail fiber assembly protein1e-0653.1
AC_000091:558920:580757580757581320564Escherichia coli W3110 DNA, complete genome1e-0653.1
NC_000913:558920:580757580757581320564Escherichia coli K12, complete genomeDLP12 prophage; predicted tail fiber assembly protein (pseudogene)1e-0653.1
NC_007712:3067000:307497130749713075399429Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein1e-0653.1
NC_010473:498252:520215520215520652438Escherichia coli str. K-12 substr. DH10B, complete genome1e-0652.8
NC_010473:623810:633475633475633912438Escherichia coli str. K-12 substr. DH10B, complete genome1e-0652.8
NC_016856:1957263:1974881197488119759391059Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphage side tail fiber assembly protein2e-0652.4
NC_011415:644811:652003652003652578576Escherichia coli SE11 chromosome, complete genomeputative phage tail assembly protein2e-0652.4
NC_013361:649518:657331657331657903573Escherichia coli O26:H11 str. 11368 chromosome, complete genometail fiber assembly protein2e-0652
NC_011094:1923870:1940354194035419416821329Salmonella enterica subsp. enterica serovar Schwarzengrund strside tail fiber protein2e-0652
AP010958:604719:611775611775612338564Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative tail fiber assembly protein3e-0651.6
NC_013353:604719:611775611775612338564Escherichia coli O103:H2 str. 12009, complete genometail fiber assembly protein3e-0651.6
NC_003197:1945858:196347619634761964357882Salmonella typhimurium LT2, complete genomephage-tail assembly-like protein3e-0651.6
NC_016810:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium strPhage Tail Assembly Protein3e-0651.6
NC_016857:1903426:192104419210441921925882Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74phage-tail assembly-like protein3e-0651.6
NC_016863:1905454:192307219230721923953882Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phage-tail assembly-like protein3e-0651.6
NC_017046:1902788:192040719204071921288882Salmonella enterica subsp. enterica serovar Typhimurium str. 798Phage Tail Assembly Protein3e-0651.6
NC_011083:1993672:201249820124982012734237Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative Tail fiber assembly protein homolog from lambdoid prophage4e-0651.2
NC_009800:2788164:279908627990862799670585Escherichia coli HS, complete genometail fiber assembly protein5e-0650.8
NC_011751:1377457:139651413965141397098585Escherichia coli UMN026 chromosome, complete genomeputative tail fiber chaperone; Qin prophage8e-0650.1
NC_011080:1944226:196848219684821969363882Salmonella enterica subsp. enterica serovar Newport str. SL254,caudovirales tail fibre assembly protein1e-0549.7