Pre_GI: BLASTP Hits

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Query: NC_002947:4362271:4370305 Pseudomonas putida KT2440, complete genome

Start: 4370305, End: 4371102, Length: 798

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was derived from a toluene-degrading isolate, Pseudomonas arvilla strain mt-2 (renamed Pseudomonas putida mt-2), by loss of its plasmid. Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:3844355:386009638600963860908813Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family2e-68258
NC_004129:3123000:312730831273083128099792Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LuxR family2e-68258
NC_008027:3844355:386445738644573865245789Pseudomonas entomophila L48, complete genometranscriptional regulator, LuxR family1e-67256
NC_015379:3175500:318305931830593183796738Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative response regulator, NarL family3e-64244
NC_016830:3697173:370346837034683703962495Pseudomonas fluorescens F113 chromosome, complete genomeLuxR family transcriptional regulator6e-40164
NC_002947:4167500:423938642393864240285900Pseudomonas putida KT2440, complete genometranscriptional regulator, LuxR family8e-26117
NC_009672:30000:325033250333291789Ochrobactrum anthropi ATCC 49188 plasmid pOANT04, completeresponse regulator receiver protein2e-23109
NC_016628:1190366:119468511946851195527843Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, LuxR family1e-1997.1
NC_015637:819233:824159824159824977819Vibrio anguillarum 775 chromosome chromosome II, complete sequenceLysR family transcriptional regulator2e-1479.7
NC_016887:2269177:229490122949012295518618Nocardia cyriacigeorgica GUH-2, complete genomeresponse regulator, two-component system2e-0963.5
NC_008702:2942246:294529629452962945943648Azoarcus sp. BH72, complete genometwo-component response regulator2e-0860.1
NC_015275:521436:523652523652524410759Clostridium lentocellum DSM 5427 chromosome, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family2e-0859.7
NC_015683:2469481:247103224710322471670639Corynebacterium ulcerans BR-AD22 chromosome, complete genometwo-component system transcriptional regulator2e-0859.7
NC_017353:646195:661369661369662022654Staphylococcus lugdunensis N920143, complete genomeputative response regulator4e-0858.9
NC_007298:2689731:268973126897312690366636Dechloromonas aromatica RCB, complete genomeregulatory protein, LuxR:Response regulator receiver4e-0858.5
NC_017351:2489460:249105724910572491659603Staphylococcus aureus subsp. aureus 11819-97 chromosome, completeoxygen regulatory protein nreC8e-0857.8
NC_017347:2511783:251278125127812513383603Staphylococcus aureus subsp. aureus T0131 chromosome, completeOxygen regulatory protein nreC8e-0857.8
NC_017343:2367177:237060623706062371208603Staphylococcus aureus subsp. aureus ECT-R 2, complete genometranscriptional regulatory protein degU (Protease production enhancerprotein)8e-0857.8
NC_017341:2544327:254532525453252545927603Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,LuxR family two component transcriptional regulator8e-0857.8
NC_013450:2463271:246426924642692464871603Staphylococcus aureus subsp. aureus ED98, complete genometranscriptional regulatory protein DegU, putative8e-0857.8
NC_007795:2455468:245889824588982459500603Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein8e-0857.8
NC_017338:2456000:245638824563882457041654Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeLuxR family two component transcriptional regulator9e-0857.8
NC_007622:2399347:240034424003442400997654Staphylococcus aureus RF122, complete genometwo-component response regulator9e-0857.8
NC_002952:2550500:255266825526682553321654Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative response regulator9e-0857.8
NC_002951:2448000:244823224482322448885654Staphylococcus aureus subsp. aureus COL, complete genometranscriptional regulatory protein DegU, putative8e-0857.8
NC_002953:2435667:244029424402942440947654Staphylococcus aureus subsp. aureus MSSA476, complete genomeputative response regulator8e-0857.8
NC_007793:2510801:251179925117992512452654Staphylococcus aureus subsp. aureus USA300, complete genometranscriptional regulator, DegU family8e-0857.8
NC_016941:2395502:239731123973112397964654Staphylococcus aureus subsp. aureus MSHR1132, complete genomeoxygen regulatory protein NreC8e-0857.8
NC_016912:2329113:233011123301112330764654Staphylococcus aureus subsp. aureus VC40 chromosome, completeDegU family transcriptional regulator8e-0857.8
NC_009641:2513300:251673025167302517383654Staphylococcus aureus subsp. aureus str. Newman chromosome,transcriptional regulator DegU family protein8e-0857.8
NC_009632:2545419:254884825488482549501654Staphylococcus aureus subsp. aureus JH1 chromosome, completeresponse regulator receiver8e-0857.8
NC_010079:2510951:251194925119492512602654Staphylococcus aureus subsp. aureus USA300_TCH1516, completetranscriptional regulator8e-0857.8
NC_002745:2446722:244772024477202448373654Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein8e-0857.8
NC_009782:2519379:252037725203772521030654Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein8e-0857.8
NC_003923:2460130:246112824611282461781654Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein8e-0857.8
NC_002758:2515310:251873925187392519392654Staphylococcus aureus subsp. aureus Mu50, complete genomeresponse regulators of two-component regulatory8e-0857.8
NC_016928:2411486:241248424124842413086603Staphylococcus aureus subsp. aureus M013 chromosome, completetwo-component response regulator9e-0857.4
NC_017337:2478877:248076724807672481369603Staphylococcus aureus subsp. aureus ED133 chromosome, completetwo-component response regulator9e-0857.4
NC_017342:857630:875234875234875836603Staphylococcus aureus subsp. aureus TCH60 chromosome, completeLuxR family DNA-binding response regulator9e-0857.4
NC_010473:498252:502403502403503035633Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator1e-0757
AC_000091:558920:563071563071563703633Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-0757
NC_000913:558920:563071563071563703633Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator1e-0757
NC_012759:461680:465831465831466463633Escherichia coli BW2952 chromosome, complete genometranscriptional regulator FimZ1e-0757
NC_011750:527470:531629531629532261633Escherichia coli IAI39 chromosome, complete genometranscriptional regulator FimZ1e-0757
NC_012731:1088321:1093493109349310962582766Klebsiella pneumoniae NTUH-K2044 chromosome, complete genometrans-acting regulatory protein of aco operon1e-0757
NC_011415:600375:607365607365608012648Escherichia coli SE11 chromosome, complete genometranscriptional regulator FimZ1e-0757
NC_011751:643976:643976643976644608633Escherichia coli UMN026 chromosome, complete genometranscriptional regulator FimZ1e-0757
NC_012947:3231893:324881132488113249443633Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completetranscriptional regulator FimZ1e-0757
NC_012967:531000:535962535962536594633Escherichia coli B str. REL606 chromosome, complete genometranscriptional regulator FimZ1e-0757
NC_011283:4438500:4484630448463044873952766Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AcoK4e-0755.5
NC_009523:585367:6023956023956038101416Roseiflexus sp. RS-1 chromosome, complete genomeresponse regulator receiver protein4e-0755.5
NC_004129:5846415:5874989587498958777242736Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LuxR family4e-0755.5
NC_015738:629297:636439636439637191753Eggerthella sp. YY7918, complete genomeDNA-binding HTH domain-containing protein4e-0755.5
NC_013757:2046000:2059002205900220617582757Geodermatophilus obscurus DSM 43160, complete genome3e-0755.5
NC_016047:2658000:265939126593912660035645Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetwo component response regulator5e-0755.1
NC_006511:2251022:226367822636782264310633Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCprobable transcriptional regulator (FimXZ protein)7e-0754.7
NC_011149:588895:593103593103593735633Salmonella enterica subsp. enterica serovar Agona str. SL483,fimbriae Z protein7e-0754.7
NC_003197:606048:610256610256610888633Salmonella typhimurium LT2, complete genomefimbrial protein Z7e-0754.7
NC_011094:593100:597308597308597940633Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator FimZ7e-0754.7
NC_011080:610428:614636614636615268633Salmonella enterica subsp. enterica serovar Newport str. SL254,fimbriae Z protein7e-0754.7
NC_011083:654479:658687658687659319633Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,fimbriae Z protein7e-0754.7
NC_016832:2363136:237505623750562375688633Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Fimbriae Z protein7e-0754.7
NC_003198:598000:602214602214602846633Salmonella enterica subsp. enterica serovar Typhi str. CT18,probable transcriptional regulator (FimXZ protein)7e-0754.7
NC_004631:2366335:237825523782552378887633Salmonella enterica subsp. enterica serovar Typhi Ty2, completeprobable transcriptional regulator7e-0754.7
NC_010102:2495441:250719625071962507828633Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-0754.7
NC_011147:2247460:225886222588622259494633Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator FimZ7e-0754.7
NC_017046:604789:609741609741610373633Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator (FimXZ protein)7e-0754.7
NC_016863:606742:610950610950611582633Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1transcriptional regulator FimZ7e-0754.7
NC_016860:644095:648303648303648935633Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator FimZ7e-0754.7
NC_016856:606742:610950610950611582633Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Stranscriptional regulator FimZ7e-0754.7
NC_016831:2402893:241402924140292414661633Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator (FimXZ protein)7e-0754.7
NC_016810:604813:609744609744610376633Salmonella enterica subsp. enterica serovar Typhimurium strtranscriptional regulator (FimXZ protein)7e-0754.7
NC_011294:585500:589737589737590369633Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator FimZ7e-0754.7
NC_011274:603901:608109608109608741633Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator FimZ7e-0754.7
NC_011205:609464:613672613672614304633Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853transcriptional regulator FimZ7e-0754.7
NC_006905:651732:655946655946656671726Salmonella enterica subsp. enterica serovar Choleraesuis strfimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family)9e-0754.3
NC_016857:604792:609744609744610556813Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74transcriptional regulator FimZ9e-0754.3
NC_008148:2498000:252802925280292528718690Rubrobacter xylanophilus DSM 9941, complete genometwo component transcriptional regulator, LuxR family8e-0754.3
NC_007298:750361:757449757449758060612Dechloromonas aromatica RCB, complete genomeregulatory protein, LuxR:Response regulator receiver8e-0754.3
NC_006270:2657726:267636626763662677010645Bacillus licheniformis ATCC 14580, complete genometwo-component response regulator8e-0754.3
NC_006322:2658587:267722626772262677870645Bacillus licheniformis ATCC 14580, complete genomehypothetical protein8e-0754.3
NC_003228:648669:658180658180658779600Bacteroides fragilis NCTC 9343, complete genomeputative LuxR family transcriptional regulator1e-0653.9
NC_016776:701684:713814713814714413600Bacteroides fragilis 638R, complete genomeputative LuxR family transcriptional regulator1e-0653.9
NC_016584:3826300:3836450383645038411504701Desulfosporosinus orientis DSM 765 chromosome, complete genomeATPase1e-0653.9
NC_009434:3413461:3415410341541034180282619Pseudomonas stutzeri A1501, complete genometranscriptional regulator1e-0653.9
NC_014209:1487699:150389515038951504512618Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,two component transcriptional regulator, LuxR family1e-0653.9
NC_006347:700838:710349710349710945597Bacteroides fragilis YCH46, complete genomeLuxR family transcriptional regulator1e-0653.5
NC_016616:2644883:266033226603322660964633Dechlorosoma suillum PS chromosome, complete genomeresponse regulator1e-0653.5
NC_007168:665284:682342682342682995654Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein2e-0653.5
NC_016609:7565483:756548375654837566118636Niastella koreensis GR20-10 chromosome, complete genometwo component transcriptional regulator, LuxR family2e-0653.5
NC_010524:4402478:440461544046154405262648Leptothrix cholodnii SP-6, complete genometwo component transcriptional regulator, LuxR family2e-0653.1
NC_014147:765941:769906769906770562657Moraxella catarrhalis RH4 chromosome, complete genometwo-component system nitrate/nitrite response regulator NarL2e-0653.1
NC_004461:2002000:200398020039802004636657Staphylococcus epidermidis ATCC 12228, complete genomeresponse regulators of two-component regulatory2e-0653.1
NC_016832:3100683:311407531140753114758684Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Monoamine regulon transcriptional regulator2e-0652.8
NC_004631:3112043:312543531254353126118684Salmonella enterica subsp. enterica serovar Typhi Ty2, completeLysR-family transcriptional regulator2e-0652.8
NC_003198:3126548:313994031399403140623684Salmonella enterica subsp. enterica serovar Typhi str. CT18,LysR-family transcriptional regulator2e-0652.8
NC_015410:3093465:314577931457793146048270Pseudomonas mendocina NK-01 chromosome, complete genometwo component LuxR family transcriptional regulator2e-0652.8
NC_013093:2471574:2482116248211624849862871Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, LuxR family3e-0652.8
NC_007908:4677856:4680475468047546831592685Rhodoferax ferrireducens T118, complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family3e-0652.4
NC_014618:3482053:350087935008793501511633Enterobacter cloacae SCF1 chromosome, complete genomeLuxR family two component transcriptional regulator3e-0652.4
NC_016631:4688000:470842847084284709057630Granulicella mallensis MP5ACTX8 chromosome, complete genometwo component transcriptional regulator, LuxR family4e-0652
NC_010465:62348:941229412294712591Yersinia pseudotuberculosis YPIII, complete genometwo component transcriptional regulator, LuxR family5e-0651.6
NC_011769:2294387:2310199231019923127182520Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeATP-dependent transcriptional regulator, MalT-like, LuxR family5e-0651.6
NC_011147:3075186:308858930885893089272684Salmonella enterica subsp. enterica serovar Paratyphi A strLysR family transcriptional regulator6e-0651.6
NC_006511:3079512:309291530929153093598684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCLysR-family transcriptional regulator6e-0651.6
NC_008800:1300500:130498713049871305673687Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,LuxR family transcriptional regulatory protein7e-0651.2
NC_011149:3187022:320031032003103201056747Salmonella enterica subsp. enterica serovar Agona str. SL483,LysR-family transcriptional regulator8e-0650.8