Pre_GI Gene

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Host: NC_011094 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011094:593100 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5931005957122613outer membrane usher protein SfmDQuickGO ontologyBLASTP
5957275967341008mannose binding protein FimHQuickGO ontologyBLASTP
596744597262519fimbrial proteinQuickGO ontologyBLASTP
597308597940633transcriptional regulator FimZQuickGO ontologyBLASTP
598544599266723fimbriae Y proteinQuickGO ontologyBLASTP
599285599593309hypothetical proteinBLASTP
599758600354597fimbriae W proteinQuickGO ontologyBLASTP
600310600546237hypothetical proteinBLASTP
6007016018641164prophage DLP12 integraseQuickGO ontologyBLASTP
602303602980678valyl-tRNA synthetaseQuickGO ontologyBLASTP
602977603219243hypothetical protein
603328603600273hypothetical protein
603638603814177hypothetical proteinBLASTP
603941604384444hypothetical proteinBLASTP
604383604538156hypothetical protein
604550605047498Eae proteinQuickGO ontologyBLASTP
605044605208165hypothetical proteinBLASTP
605219605512294anti-RecBCD protein 2QuickGO ontologyBLASTP
605536605919384Gp40QuickGO ontologyBLASTP
605919606056138essential recombination function protein ErfQuickGO ontologyBLASTP
606781606933153hypothetical proteinBLASTP
607074608042969hypothetical proteinBLASTP
608225608695471hypothetical proteinBLASTP
608970609110141hypothetical protein
609841609957117hypothetical proteinBLASTP
610406610621216hypothetical proteinBLASTP
610894611013120transcriptional activator-regulatory proteinQuickGO ontologyBLASTP
611048611194147hypothetical proteinBLASTP
611187612047861gp59QuickGO ontologyBLASTP
6122036140351833gp61QuickGO ontologyBLASTP
614186614314129gp62QuickGO ontologyBLASTP
614332614481150hypothetical proteinBLASTP
615183615311129hypothetical proteinBLASTP
615786615962177RusQuickGO ontologyBLASTP
616143616322180hypothetical proteinBLASTP
617622617747126hypothetical protein
617971618243273bacteriophage proteinQuickGO ontologyBLASTP
618243618740498phage lysozymeQuickGO ontologyBLASTP
619506620003498KilA-N domain family proteinQuickGO ontologyBLASTP
620075620257183bacteriophage proteinQuickGO ontology