Pre_GI: BLASTP Hits

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Query: NC_002947:1268089:1281215 Pseudomonas putida KT2440, complete genome

Start: 1281215, End: 1282906, Length: 1692

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was derived from a toluene-degrading isolate, Pseudomonas arvilla strain mt-2 (renamed Pseudomonas putida mt-2), by loss of its plasmid. Common environmental bacterium. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007347:3612918:3619050361905036208191770Ralstonia eutropha JMP134 chromosome 1, complete sequenceRecombinase9e-90331
NC_011769:3434744:3450826345082634525981773Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeRecombinase7e-65248
NC_002678:3701500:3705162370516237068981737Mesorhizobium loti MAFF303099, complete genomesite-specific recombinase4e-62239
NC_016812:4246542:4250124425012442512931170Sinorhizobium fredii HH103, complete genomesite-specific recombinase4e-61236
NC_007519:2773000:2776921277692127788551935Desulfovibrio alaskensis G20 chromosome, complete genomehypothetical protein2e-59230
NC_007517:3524715:3540161354016135420291869Geobacter metallireducens GS-15, complete genomeResolvase-like:Recombinase2e-57223
NC_011979:646518:6672356672356690941860Geobacter sp. FRC-32, complete genomeRecombinase2e-53210
NC_007614:109000:1135631135631151971635Nitrosospira multiformis ATCC 25196 chromosome 1, completeRecombinase4e-53209
NC_009659:3520093:3543028354302835448781851Janthinobacterium sp. Marseille chromosome, complete genomesite-specific recombinase6e-51202
NC_007493:1672163:1704748170474817062771530Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative site-specific recombinase3e-50199
NC_011146:4196652:4202142420214242037791638Geobacter bemidjiensis Bem, complete genomeRecombinase1e-44181
NC_011415:600375:6208596208596223851527Escherichia coli SE11 chromosome, complete genomeputative phage recombinase4e-43176
CU928145:824367:8316568316568331821527Escherichia coli 55989 chromosome, complete genomeputative site-specific invertase; DLP12 prophage7e-43175
NC_011748:824367:8316568316568331821527Escherichia coli 55989, complete genomeputative site-specific invertase; DLP12 prophage7e-43175
NC_004547:2810151:2825271282527128268811611Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative integrase/recombinase9e-43175
AC_000091:558920:5681255681255696511527Escherichia coli W3110 DNA, complete genomepredicted recombinase2e-42174
NC_000913:558920:5681255681255696511527Escherichia coli K12, complete genomeDLP12 prophage; predicted recombinase2e-42174
NC_010473:498252:5074575074575089831527Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted recombinase2e-42174
NC_011353:2957962:2968757296875729702831527Escherichia coli O157:H7 str. EC4115 chromosome, complete genomerecombinase family protein2e-42174
NC_012759:461680:4708854708854724111527Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative recombinase2e-42174
NC_012947:3231893:3243361324336132448871527Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase2e-42174
NC_012967:531000:5407925407925423181527Escherichia coli B str. REL606 chromosome, complete genomeputative recombinase2e-42174
NC_013008:2910567:2923628292362829251541527Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDLP12 prophage recombinase2e-42174
NC_013941:699286:7082487082487097741527Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeDLP12 prophage; recombinase2e-42174
NC_014375:1242750:1243226124322612449291704Brevundimonas subvibrioides ATCC 15264 chromosome, complete genomeRecombinase1e-42174
NC_003910:486776:4939534939534959982046Colwellia psychrerythraea 34H, complete genomeputative site-specific recombinase3e-42173
NC_010338:3743000:3747659374765937493741716Caulobacter sp. K31, complete genomeRecombinase5e-42172
NC_011979:773673:7870917870917889321842Geobacter sp. FRC-32, complete genomeRecombinase2e-41170
NC_012559:854507:8853478853478863481002Laribacter hongkongensis HLHK9, complete genomeRecombinase2e-41170
NC_016614:1178000:1189433118943311912291797Vibrio sp. EJY3 chromosome 2, complete sequencesite-specific recombinase6e-41169
NC_009832:1664238:1681671168167116831821512Serratia proteamaculans 568, complete genomeResolvase domain7e-39162
NC_012988:2455807:2460335246033524620831749Methylobacterium extorquens DM4, complete genomerecombinase2e-37157
NC_014006:850763:8565128565128582571746Sphingobium japonicum UT26S chromosome 1, complete genomeinvertase/recombinase like protein4e-37156
NC_020209:4549563:4562999456299945646901692Pseudomonas poae RE*1-1-14, complete genomerecombinase5e-36152
NC_009801:1392696:1412677141267714141971521Escherichia coli E24377A, complete genomeputative recombinase1e-34148
NC_007384:2007467:2008715200871520102351521Shigella sonnei Ss046, complete genomehypothetical bacteriophage protein2e-34147
NC_018678:1820390:1826786182678618284561671Alteromonas macleodii str. 'English Channel 673' chromosome,site-specific recombinase4e-32139
NC_007384:1086025:1089944108994410911881245Shigella sonnei Ss046, complete genomehypothetical protein1e-31137
NC_009778:2227627:2270858227085822726601803Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-31137
NC_002947:3404000:3412988341298834146131626Pseudomonas putida KT2440, complete genomephage recombinase, putative7e-31135
NC_008781:2575213:2579464257946425810861623Polaromonas naphthalenivorans CJ2, complete genomeRecombinase9e-31135
NC_014121:2330451:2335767233576723375361770Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein8e-30132
NC_007492:3954345:3962384396238439639821599Pseudomonas fluorescens PfO-1, complete genomeRecombinase8e-29129
NC_015633:1702000:1709920170992017117971878Vibrio anguillarum 775 chromosome chromosome I, complete sequenceSite-specific recombinase4e-28126
NC_011283:2185462:2199912219991222014831572Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family1e-27124
NC_013850:2103469:2133323213332321348941572Klebsiella variicola At-22 chromosome, complete genomeResolvase domain protein2e-27124
NC_017047:1796000:1800214180021418019651752Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein5e-27123
NC_008463:1912348:1939714193971419412911578Pseudomonas aeruginosa UCBPP-PA14, complete genomepossible recombinase3e-26120
NC_017047:3085000:3123842312384231255751734Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein1e-24114
NC_020211:2012480:2021007202100720226861680Serratia marcescens WW4, complete genomeputative recombinase, DLP12 prophage4e-24113
NC_010501:908000:9248249248249264701647Pseudomonas putida W619, complete genomeResolvase domain6e-24112
NC_016616:760145:7740577740577757781722Dechlorosoma suillum PS chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-23110
NC_004578:2560473:2566716256671625683201605Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein5e-23109
NC_005070:1088808:1099790109979011016881899Synechococcus sp. WH 8102, complete genomepossible site-specific recombinase9e-21102
NC_005070:1331741:1342597134259713446002004Synechococcus sp. WH 8102, complete genomepartial homology to phage recombinase2e-20100
NC_021066:3201500:3217811321781132193071497Raoultella ornithinolytica B6, complete genomeputative recombinase, DLP12 prophage1e-1688.2
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase9e-1685.5
NC_017986:5509569:5518050551805055194201371Pseudomonas putida ND6 chromosome, complete genomephage recombinase1e-1585.5
NC_012667:931390:9402429402429419121671Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein2e-1584.7
NC_009456:787322:8150358150358166931659Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein2e-1584.3
NC_012583:440420:4472494472494489071659Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein2e-1584.3
NC_016048:4163225:4188450418845041900241575Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase3e-1583.6
NC_010320:1268355:1309657130965713112161560Thermoanaerobacter sp. X514 chromosome, complete genomeresolvase domain-containing protein6e-1582.8
NC_014538:1598106:1603166160316616047251560Thermoanaerobacter sp. X513 chromosome, complete genomeResolvase domain-containing protein6e-1582.8
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision3e-1480.5
NC_014121:2514544:2525778252577825277872010Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-1378.6
NC_016627:793583:7976187976187991341517Clostridium clariflavum DSM 19732 chromosome, complete genome5e-1376.6
NC_010337:98974:1166181166181182281611Heliobacterium modesticaldum Ice1, complete genomeresolvase, n-terminal:recombinase, putative5e-1376.6
NC_011837:3814000:3824317382431738258911575Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-1376.3
NC_009706:3882500:3892814389281438943881575Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein6e-1376.3
NC_014376:3399366:3414149341414934157231575Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein6e-1376.3
NC_017904:4742775:4779594477959447809251332Mycobacterium sp. MOTT36Y chromosome, complete genomerecombinase7e-1376.3
NC_008595:3914463:3917497391749739189361440Mycobacterium avium 104, complete genomeintegrase/recombinase1e-1275.1
NC_018870:757416:8049218049218065311611Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase YokA3e-1273.9
NC_016627:4270949:4290346429034642919141569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin5e-1273.2
NC_016822:1431200:1439276143927614411591884Shigella sonnei 53G, complete genomehypothetical protein7e-1272.8
NC_004461:1:4244142441440691629Staphylococcus epidermidis ATCC 12228, complete genomecassette chromosome recombinase B9e-1272.4
NC_010003:449192:4623954623954639631569Petrotoga mobilis SJ95, complete genomeResolvase domain3e-1170.5
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein4e-1170.1
NC_014410:800500:8335678335678351351569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain4e-1170.1
NC_009445:467682:470295470295471035741Bradyrhizobium sp. ORS 278 chromosome, complete genome9e-1168.9
NC_015977:3424178:3431387343138734330301644Roseburia hominis A2-183 chromosome, complete genomecassette chromosome recombinase B1e-1068.9
NC_011830:2623346:2635003263500326365831581Desulfitobacterium hafniense DCB-2, complete genomeResolvase domain protein1e-1068.6
NC_013440:3813132:3838534383853438401111578Haliangium ochraceum DSM 14365, complete genomeResolvase domain protein2e-1068.2
NC_009633:4097536:4102193410219341037581566Alkaliphilus metalliredigens QYMF chromosome, complete genomeresolvase domain-containing protein2e-1068.2
NC_016791:4038069:4038069403806940396341566Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-1067.8
NC_016627:4323370:4329798432979843313661569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-1067.8
NC_011898:3367457:3372756337275633743211566Clostridium cellulolyticum H10, complete genomeResolvase domain protein5e-1066.6
NC_018870:2316499:2330996233099623325641569Thermacetogenium phaeum DSM 12270 chromosome, complete genomerecombinase5e-1066.6
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein6e-1066.2
NC_009012:1934107:1938931193893119404991569Clostridium thermocellum ATCC 27405, complete genomeRecombinase7e-1066.2
NC_014376:2964731:2974851297485129762241374Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein7e-1065.9
NC_011837:2605409:2628941262894126305301590Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-0965.5
NC_009706:2673906:2697438269743826990271590Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein1e-0965.5
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative1e-0965.1
NC_008576:3307297:3314177331417733155141338Magnetococcus sp. MC-1, complete genomeResolvase, N-terminal domain2e-0964.7
NC_010338:4530403:4545638454563845473771740Caulobacter sp. K31, complete genomeResolvase domain3e-0963.9
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein3e-0963.9
NC_009952:366959:3861373861373878131677Dinoroseobacter shibae DFL 12, complete genomerecombinase4e-0963.5
NC_015660:3174424:3178571317857131800281458Geobacillus thermoglucosidasius C56-YS93 chromosome, completeResolvase domain-containing protein4e-0963.5
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein5e-0963.2
NC_013552:207345:2073452073452090361692Dehalococcoides sp. VS, complete genomeresolvase domain protein, PinR type9e-0962.4
NC_015697:506494:5326675326675342531587Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase9e-0962.4
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase9e-0962.4
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome9e-0962.4
NC_016109:4485925:4514314451431445157471434Kitasatospora setae KM-6054, complete genomehypothetical protein1e-0862
NC_014394:1815638:1825770182577018274041635Gallionella capsiferriformans ES-2 chromosome, complete genomeResolvase domain2e-0861.6
NC_015312:848403:8526538526538543411689Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeResolvase domain-containing protein1e-0861.6
NC_008023:1070986:1092958109295810948891932Streptococcus pyogenes MGAS2096, complete genomeSite-specific recombinase3e-0860.8
NC_015425:2528549:2528549252854925301351587Clostridium botulinum BKT015925 chromosome, complete genomesite-specific recombinase, resolvase family3e-0860.8
NC_009720:251703:2779762779762796311656Xanthobacter autotrophicus Py2, complete genomeresolvase domain-containing protein3e-0860.5
NC_008278:3169500:3172236317223631737441509Frankia alni ACN14a, complete genomehypothetical protein4e-0860.5
NC_014639:3520874:3536937353693735386251689Bacillus atrophaeus 1942 chromosome, complete genomeresolvase domain-containing protein4e-0860.1
CP002207:3520874:3536937353693735386251689Bacillus atrophaeus 1942, complete genomeresolvase domain protein4e-0860.1
NC_009720:583060:5876205876205892451626Xanthobacter autotrophicus Py2, complete genome9e-0858.9
NC_014625:1187608:1204334120433412058811548Ketogulonicigenium vulgare Y25 chromosome, complete genomeresolvase1e-0758.5
NC_008278:296526:3036833036833051191437Frankia alni ACN14a, complete genomeputative integrase/recombinase.2e-0758.2
NC_019892:2684793:2696016269601626972331218Singulisphaera acidiphila DSM 18658 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-0757.8
NC_015673:1038673:1055311105531110568791569Corynebacterium resistens DSM 45100 chromosome, complete genomeprophage resolvase3e-0757
NC_013364:1997891:200295320029532003306354Escherichia coli O111:H- str. 11128, complete genome4e-0757
NC_014623:3029853:3028327302832730298561530Stigmatella aurantiaca DW4/3-1 chromosome, complete genomesite-specific recombinase5e-0756.6
NC_015977:3324000:3328809332880933306891881Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase, resolvase family protein5e-0756.6
NC_008530:1454118:1480338148033814819991662Lactobacillus gasseri ATCC 33323, complete genomeSite-specific recombinase, DNA invertase Pin related protein5e-0756.6
NC_012793:383612:3892203892203907161497Geobacillus sp. WCH70, complete genomeRecombinase6e-0756.6
NC_003295:921256:9375829375829389641383Ralstonia solanacearum GMI1000, complete genomePUTATIVE SITE-SPECIFIC INTEGRASE/RECOMBINASE PROTEIN6e-0756.2
NC_007432:654904:6992176992177004581242Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family6e-0756.2
NC_006510:887545:8999548999549014261473Geobacillus kaustophilus HTA426, complete genomesite-specific recombinase (resolvase family)8e-0755.8
NC_016791:3953972:3964053396405339656841632Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin2e-0654.3
NC_015675:2247960:2274308227430822759331626Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase3e-0654.3
NC_010337:2793667:2817618281761828191951578Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative3e-0654.3
NC_013316:2033906:2043677204367720455571881Clostridium difficile R20291, complete genomesite-specific recombinase, resolvase family, putative3e-0653.9
NC_014376:2964731:2984649298464929862531605Clostridium saccharolyticum WM1 chromosome, complete genomeResolvase domain protein5e-0653.1