Pre_GI Gene

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Host: NC_004547 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:2810151 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28101512810663513Holliday junction resolvaseQuickGO ontologyBLASTP
28107442811487744hypothetical proteinBLASTP
28115112811954444dATP pyrophosphohydrolaseQuickGO ontologyBLASTP
281195628137551800aspartyl-tRNA synthetaseQuickGO ontologyBLASTP
281429628155131218putative signal transduction proteinQuickGO ontologyBLASTP
28156012816095495hypothetical proteinBLASTP
28161712816962792hypothetical proteinBLASTP
281696228191962235putative DNA-binding proteinQuickGO ontology
28194232820118696hypothetical protein
28201152820354240hypothetical protein
28207712820968198putative phage-related proteinQuickGO ontology
28217642822402639resolvaseQuickGO ontologyBLASTP
28231492823316168hypothetical protein
28236412824555915hypothetical protein
282527128268811611putative integraserecombinaseQuickGO ontologyBLASTP
28269292827279351conserved hypothetical protein partialQuickGO ontologyBLASTP
28274362827831396hypothetical proteinBLASTP
28280262828805780hypothetical proteinBLASTP
28288022829785984hypothetical proteinBLASTP
28302782830577300hypothetical proteinBLASTP
28307072831090384hypothetical protein
28311052831689585hypothetical protein
28317032832305603hypothetical proteinBLASTP
28326862832958273hypothetical protein
28331142833872759copper homeostasis proteinQuickGO ontologyBLASTP
28343112834895585hypothetical proteinBLASTP
283551528372451731arginyl-tRNA synthetaseQuickGO ontologyBLASTP