Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008563: Escherichia coli APEC O1, complete genome

NCBI: NC_008563

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1149709*17318423476Island text1.5482932.283628.9926Neighbours41BLASTN+149709.gbk
2258725*28280524081Island text2.0130834.795637.5015Neighbours41BLASTN+IslandViewer 258725.gbk
328713630584318708Island text1.6662229.854729.8818BLASTNIslandViewer 287136.gbk
4318993*36258343591Island text1.5505132.63327.1445Neighbours41BLASTN+IslandViewer 318993.gbk
51175035*119859923565Island text1.7013131.920828.1587Neighbours41BLASTN+IslandViewer 1175035.gbk
61217804124159923796Island text2.5637735.949119.0864Neighbours41BLASTN+IslandViewer 1217804.gbk
71475500149389218393Island text1.5314731.161834.2307Neighbours41BLASTN+IslandViewer 1475500.gbk
81505405154006134657Island text2.3433435.908525.8382Neighbours41BLASTN+IslandViewer 1505405.gbk
91577879160172323845Island text1.45430.423236.9716Neighbours41BLASTN+IslandViewer 1577879.gbk
101620943164109920157Island text2.113531.479821.2358Neighbours41BLASTN+IslandViewer 1620943.gbk
111651270167412522856Island text1.6188628.96427.2506Neighbours41BLASTN+1651270.gbk
122041345206368122337Island text1.8375831.343218.4639Neighbours41BLASTN+IslandViewer 2041345.gbk
132094855212109926245Island text1.6015535.418724.7789Neighbours11BLASTN+2094855.gbk
142182270221156429295Island text3.6952241.100425.0631Neighbours41BLASTN+IslandViewer 2182270.gbk
152565876258822422349Island text1.7597634.043427.1751Neighbours41BLASTN+IslandViewer 2565876.gbk
162610499263209921601Island text2.1152731.108120.2598Neighbours41BLASTN+IslandViewer 2610499.gbk
172909945293044120497Island text1.8042330.553434.1597Neighbours41BLASTN+IslandViewer 2909945.gbk
182946391*296667220282Island text1.8776832.073420.8409Neighbours41BLASTN+IslandViewer 2946391.gbk
193119284314330124018Island text1.4112131.912735.4306Neighbours51BLASTN+3119284.gbk
203332114335140519292Island text1.5512436.349631.6333Neighbours41BLASTN+3332114.gbk
213362058338959927542Island text4.235442.102718.7307Neighbours41BLASTN+IslandViewer 3362058.gbk
223843859386844824590Island text2.0250634.153625.1586Neighbours41BLASTNIslandViewer 3843859.gbk
233888232*390776619535Island text1.6402828.702625.3807Neighbours41BLASTN+IslandViewer 3888232.gbk
244083558410710723550Island text2.5493535.564617.4402Neighbours41BLASTNIslandViewer 4083558.gbk
254656000467809922100Island text1.4708333.724527.0069Neighbours41BLASTN+IslandViewer 4656000.gbk
264707826473072322898Island text1.5037832.301823.8519Neighbours41BLASTN+IslandViewer 4707826.gbk
274739333476356524233Island text1.6693437.098225.6375Neighbours41BLASTN+IslandViewer 4739333.gbk
284905186492360518420Island text1.7904929.243717.5539Neighbours41BLASTN+IslandViewer 4905186.gbk
295011997503931827322Island text2.4338135.938516.5382Neighbours41BLASTN+IslandViewer 5011997.gbk