Pre_GI: BLASTN Hits

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Query: NC_008563:4707826 Escherichia coli APEC O1, complete genome

Start: 4707826, End: 4730723, Length: 22898

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004431:43191524319152434223723086Escherichia coli CFT073, complete genome024120BLASTN svgBLASTP svg
NC_011750:43900004390000444275952760Escherichia coli IAI39 chromosome, complete genome015310BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome011940BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome011930BLASTN svgBLASTP svg
NC_011750:47757704775770480021124442Escherichia coli IAI39 chromosome, complete genome08564BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,06009BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome02839BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome02831BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome01774BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome01719BLASTN svgBLASTP svg
NC_011748:4950723*4950723498014229420Escherichia coli 55989, complete genome01685BLASTN svgBLASTP svg
NC_008253:31613113161311320913747827Escherichia coli 536, complete genome01685BLASTN svgBLASTP svg
CU928145:4950723*4950723498014229420Escherichia coli 55989 chromosome, complete genome01685BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome01600BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome01552BLASTN svgBLASTP svg
AP010958:36695003669500372827458775Escherichia coli O103:H2 str. 12009 DNA, complete genome01546BLASTN svgBLASTP svg
NC_013716:5201097*5201097527659975503Citrobacter rodentium ICC168, complete genome01489BLASTN svgBLASTP svg
NC_010498:11179381117938114953131594Escherichia coli SMS-3-5, complete genome01197BLASTN svgBLASTP svg
NC_004431:1211000*1211000123322222223Escherichia coli CFT073, complete genome01166BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome01013BLASTN svgBLASTP svg
NC_008563:33321143332114335140519292Escherichia coli APEC O1, complete genome01005BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence0656BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome0656BLASTN svgBLASTP svg
NC_010498:32913443291344332017728834Escherichia coli SMS-3-5, complete genome0648BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome2e-179636BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome2e-179636BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome2e-179636BLASTN svgBLASTP svg
NC_010498:16593281659328168149222165Escherichia coli SMS-3-5, complete genome9e-179634BLASTN svgBLASTP svg
NC_010498:10940001094000111633222333Escherichia coli SMS-3-5, complete genome4e-178632BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome7e-161575BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome1e-159571BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome1e-159571BLASTN svgBLASTP svg
NC_004337:20359452035945205669020746Shigella flexneri 2a str. 301, complete genome5e-159569BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome5e-159569BLASTN svgBLASTP svg
NC_004741:41605004160500418981229313Shigella flexneri 2a str. 2457T, complete genome5e-159569BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome5e-159569BLASTN svgBLASTP svg
NC_008258:35505003550500357858028081Shigella flexneri 5 str. 8401, complete genome1e-156561BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence1e-156561BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence7e-155555BLASTN svgBLASTP svg
NC_000913:3176000*3176000319898722988Escherichia coli K12, complete genome3e-154553BLASTN svgBLASTP svg
NC_000913:2975659*2975659300672831070Escherichia coli K12, complete genome3e-154553BLASTN svgBLASTP svg
AC_000091:4501430*4501430452291521486Escherichia coli W3110 DNA, complete genome3e-154553BLASTN svgBLASTP svg
AC_000091:31802753180275319962119347Escherichia coli W3110 DNA, complete genome3e-154553BLASTN svgBLASTP svg
AC_000091:29762932976293300863132339Escherichia coli W3110 DNA, complete genome3e-154553BLASTN svgBLASTP svg
NC_000913:44947734494773451470019928Escherichia coli K12, complete genome3e-154553BLASTN svgBLASTP svg
NC_008258:25428632542863256544822586Shigella flexneri 5 str. 8401, complete genome3e-154553BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome3e-154553BLASTN svgBLASTP svg
NC_010473:3069529*3069529310059831070Escherichia coli str. K-12 substr. DH10B, complete genome3e-154553BLASTN svgBLASTP svg
NC_010473:3273882*3273882329673222851Escherichia coli str. K-12 substr. DH10B, complete genome3e-154553BLASTN svgBLASTP svg
NC_010473:4596500*4596500461806621567Escherichia coli str. K-12 substr. DH10B, complete genome3e-154553BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome3e-154553BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome4e-153549BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome2e-152547BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome7e-152545BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome7e-152545BLASTN svgBLASTP svg
NC_007606:12091321209132122967220541Shigella dysenteriae Sd197, complete genome7e-152545BLASTN svgBLASTP svg
NC_007384:3151344*3151344317840127058Shigella sonnei Ss046, complete genome7e-152545BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome7e-152545BLASTN svgBLASTP svg
NC_007384:37417083741708376309921392Shigella sonnei Ss046, complete genome1e-150541BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome1e-150541BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome1e-150541BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome4e-150539BLASTN svgBLASTP svg
NC_007384:20074672007467203964532179Shigella sonnei Ss046, complete genome2e-149537BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence9e-142511BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome9e-142511BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome4e-141509BLASTN svgBLASTP svg
NC_002695:14179121417912143730119390Escherichia coli O157:H7 str. Sakai, complete genome8e-127462BLASTN svgBLASTP svg
NC_002655:11039911103991112782323833Escherichia coli O157:H7 EDL933, complete genome8e-127462BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome5e-125456BLASTN svgBLASTP svg
NC_004431:27986827986832229542428Escherichia coli CFT073, complete genome7e-124452BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome3e-120440BLASTN svgBLASTP svg
NC_010498:48560114856011487626620256Escherichia coli SMS-3-5, complete genome1e-113418BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome6e-112412BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome1e-57232BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome5e-57230BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome2e-56228BLASTN svgBLASTP svg
NC_008253:29650029650032229825799Escherichia coli 536, complete genome8e-56226BLASTN svgBLASTP svg
NC_002695:45841774584177463575951583Escherichia coli O157:H7 str. Sakai, complete genome5e-54220BLASTN svgBLASTP svg
NC_002655:46531604653160470328250123Escherichia coli O157:H7 EDL933, complete genome5e-54220BLASTN svgBLASTP svg
NC_004431:11665681166568119813631569Escherichia coli CFT073, complete genome2e-53218BLASTN svgBLASTP svg
NC_008782:2326439*2326439236857442136Acidovorax sp. JS42, complete genome2e-47198BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome7e-44186BLASTN svgBLASTP svg
NC_014121:37769023776902380024423343Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-44186BLASTN svgBLASTP svg
NC_009649:948719487111709922229Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,6e-38167BLASTN svgBLASTP svg
NC_021150:2026496*2026496204664620151Azotobacter vinelandii CA6, complete genome4e-36161BLASTN svgBLASTP svg
NC_012560:2026483*2026483204663320151Azotobacter vinelandii DJ, complete genome4e-36161BLASTN svgBLASTP svg
NC_020064:3609844*3609844365321743374Serratia marcescens FGI94, complete genome6e-29137BLASTN svgBLASTP svg
NC_007946:10731351073135109859925465Escherichia coli UTI89, complete genome6e-29137BLASTN svgBLASTP svg
AP010958:52728635272863529459921737Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-27131BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome1e-26129BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome2e-25125BLASTN svgBLASTP svg
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome5e-23117BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome8e-22113BLASTN svgBLASTP svg
NC_004431:11197001119700115120831509Escherichia coli CFT073, complete genome8e-22113BLASTN svgBLASTP svg
NC_013592:446092*44609246819222101Dickeya dadantii Ech586, complete genome8e-19103BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome8e-19103BLASTN svgBLASTP svg
NC_011750:10940001094000111509921100Escherichia coli IAI39 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome1e-1799.6BLASTN svgBLASTP svg
CP002797:2062006*2062006208330121296Escherichia coli NA114, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_013223:2609697*2609697264530735611Desulfohalobium retbaense DSM 5692, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015663:113797137971Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome3e-1591.7BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013166:24286324286326142618564Kangiella koreensis DSM 16069, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015690:11865451186545126259476050Paenibacillus mucilaginosus KNP414 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010634:13423931342393136733024938Yersinia pseudotuberculosis PB1/+, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006300:60051660051663151030995Mannheimia succiniciproducens MBEL55E, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013205:1548500*1548500161221263713Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,3e-1281.8BLASTN svgBLASTP svg
NC_015061:38019273801927382632824402Rahnella sp. Y9602 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_015663:54942554942558284933425Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_020181:51305135130513517631045798Enterobacter aerogenes EA1509E, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008309:18278091827809185114023332Haemophilus somnus 129PT, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008260:29612912961291298426722977Alcanivorax borkumensis SK2, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010337:61630461630464593229629Heliobacterium modesticaldum Ice1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014973:493500*49350051995726458Geobacter sp. M18 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_019897:128610*12861020195773348Thermobacillus composti KWC4 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015737:14410861441086146024319158Clostridium sp. SY8519, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_014098:30302743030274305764927376Bacillus tusciae DSM 2912 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_014828:2657623*2657623268107823456Ethanoligenens harbinense YUAN-3 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015663:1356982*1356982138951032529Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015663:18690001869000191219543196Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007645:4677965*4677965469591417950Hahella chejuensis KCTC 2396, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009832:19464011946401197178325383Serratia proteamaculans 568, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010628:34090003409000342992220923Nostoc punctiforme PCC 73102, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013205:289291*28929131395124661Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,1e-0869.9BLASTN svgBLASTP svg
NC_013411:3201331*3201331322466223332Geobacillus sp. Y412MC61, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014915:3207300*3207300323063123332Geobacillus sp. Y412MC52 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_018870:427357*42735744729619940Thermacetogenium phaeum DSM 12270 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_006177:12383*123833284720465Symbiobacterium thermophilum IAM 14863, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006177:12546351254635128152926895Symbiobacterium thermophilum IAM 14863, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006177:2398482*2398482246275864277Symbiobacterium thermophilum IAM 14863, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006177:28834762883476292809944624Symbiobacterium thermophilum IAM 14863, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009348:14759551475955153571059756Aeromonas salmonicida subsp. salmonicida A449, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007912:55600055600057912223123Saccharophagus degradans 2-40, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008346:22513532251353226935218000Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete7e-0763.9BLASTN svgBLASTP svg
NC_008346:14310511431051145644725397Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete7e-0763.9BLASTN svgBLASTP svg
NC_009668:594500*59450062259928100Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequence3e-0661.9BLASTN svgBLASTP svg