Pre_GI: BLASTN Hits

Some Help

Query: NC_008563:2041345 Escherichia coli APEC O1, complete genome

Start: 2041345, End: 2063681, Length: 22337

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
CP002516:1902431*1902431192618823758Escherichia coli KO11, complete genome013610BLASTN svgBLASTP svg
CP002185:2181936*2181936220473822803Escherichia coli W, complete genome013610BLASTN svgBLASTP svg
NC_004431:2185750*2185750224915063401Escherichia coli CFT073, complete genome012650BLASTN svgBLASTP svg
NC_008253:1938975*1938975200160362629Escherichia coli 536, complete genome012590BLASTN svgBLASTP svg
NC_004337:20359452035945205669020746Shigella flexneri 2a str. 301, complete genome012210BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome012200BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome012200BLASTN svgBLASTP svg
NC_009801:21591232159123218213823016Escherichia coli E24377A, complete genome011610BLASTN svgBLASTP svg
AP010958:22729192272919229869725779Escherichia coli O103:H2 str. 12009 DNA, complete genome011600BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome011590BLASTN svgBLASTP svg
NC_002695:26554452655445267786922425Escherichia coli O157:H7 str. Sakai, complete genome011550BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome011550BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome011540BLASTN svgBLASTP svg
NC_000913:2028472*2028472205003821567Escherichia coli K12, complete genome011540BLASTN svgBLASTP svg
NC_002655:27306592730659276187131213Escherichia coli O157:H7 EDL933, complete genome011520BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome011450BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome011430BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome09549BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome07557BLASTN svgBLASTP svg
AP010958:2134556*2134556215269018135Escherichia coli O103:H2 str. 12009 DNA, complete genome06764BLASTN svgBLASTP svg
NC_011751:68041768041770234121925Escherichia coli UMN026 chromosome, complete genome06231BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome05335BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome05335BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome05327BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome05041BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome04339BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome04294BLASTN svgBLASTP svg
NC_002655:91965491965493956619913Escherichia coli O157:H7 EDL933, complete genome04205BLASTN svgBLASTP svg
AP010958:60471960471962691322195Escherichia coli O103:H2 str. 12009 DNA, complete genome03988BLASTN svgBLASTP svg
NC_008563:15054051505405154006134657Escherichia coli APEC O1, complete genome03901BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome03414BLASTN svgBLASTP svg
NC_008563:50119975011997503931827322Escherichia coli APEC O1, complete genome02349BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome01774BLASTN svgBLASTP svg
NC_002655:19091391909139193312123983Escherichia coli O157:H7 EDL933, complete genome01735BLASTN svgBLASTP svg
NC_002695:28939512893951291868324733Escherichia coli O157:H7 str. Sakai, complete genome01275BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome01247BLASTN svgBLASTP svg
NC_011750:527470*52747055213724668Escherichia coli IAI39 chromosome, complete genome0942BLASTN svgBLASTP svg
NC_004431:13529061352906137651123606Escherichia coli CFT073, complete genome0904BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome0682BLASTN svgBLASTP svg
NC_011750:19313841931384195623124848Escherichia coli IAI39 chromosome, complete genome0642BLASTN svgBLASTP svg
NC_011751:13774571377457140058923133Escherichia coli UMN026 chromosome, complete genome6e-180638BLASTN svgBLASTP svg
AP010958:14725061472506149531022805Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-179636BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome9e-176624BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome9e-176624BLASTN svgBLASTP svg
NC_011750:91995391995393907219120Escherichia coli IAI39 chromosome, complete genome8e-173615BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome8e-170605BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome8e-170605BLASTN svgBLASTP svg
AP010958:13057121305712133215626445Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-142513BLASTN svgBLASTP svg
NC_002695:21583142158314218207123758Escherichia coli O157:H7 str. Sakai, complete genome9e-142511BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome9e-102379BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-102379BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str1e-82315BLASTN svgBLASTP svg
CP002797:4812799*4812799483159918801Escherichia coli NA114, complete genome4e-70274BLASTN svgBLASTP svg
NC_013716:12989321298932132714328212Citrobacter rodentium ICC168, complete genome5e-63250BLASTN svgBLASTP svg
NC_011740:1991941*1991941201386221922Escherichia fergusonii ATCC 35469, complete genome8e-56226BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome5e-54220BLASTN svgBLASTP svg
CU928145:29908029908032372424645Escherichia coli 55989 chromosome, complete genome4e-48200BLASTN svgBLASTP svg
NC_011748:29908029908032372424645Escherichia coli 55989, complete genome4e-48200BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome3e-43184BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome3e-43184BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome3e-43184BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome6e-41176BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome1e-36163BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome1e-36163BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome4e-36161BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome4e-36161BLASTN svgBLASTP svg
NC_004631:948054*94805498991041857Salmonella enterica subsp. enterica serovar Typhi Ty2, complete4e-36161BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome4e-36161BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome4e-36161BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome9e-34153BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-34153BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome9e-34153BLASTN svgBLASTP svg
NC_013716:2139952*2139952219678356832Citrobacter rodentium ICC168, complete genome4e-33151BLASTN svgBLASTP svg
AC_000091:16270491627049165562928581Escherichia coli W3110 DNA, complete genome1e-26129BLASTN svgBLASTP svg
NC_000913:1625500*1625500165193926440Escherichia coli K12, complete genome1e-26129BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome1e-26129BLASTN svgBLASTP svg
NC_014500:1862000*1862000191726855269Dickeya dadantii 3937 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_021066:601029*60102962413023102Raoultella ornithinolytica B6, complete genome5e-26127BLASTN svgBLASTP svg
NC_015663:4906652*4906652493024623595Enterobacter aerogenes KCTC 2190 chromosome, complete genome5e-26127BLASTN svgBLASTP svg
NC_010067:892729*89272992523832510Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete2e-25125BLASTN svgBLASTP svg
NC_011149:1987291*1987291203423646946Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-25123BLASTN svgBLASTP svg
NC_020211:3398281*3398281342338225102Serratia marcescens WW4, complete genome3e-24121BLASTN svgBLASTP svg
NC_012912:2901021*2901021292518824168Dickeya zeae Ech1591, complete genome5e-23117BLASTN svgBLASTP svg
NC_013421:1696746*1696746172309926354Pectobacterium wasabiae WPP163, complete genome8e-19103BLASTN svgBLASTP svg
NC_011740:62140862140864031618909Escherichia fergusonii ATCC 35469, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007946:28947932894793291753922747Escherichia coli UTI89, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008563:29099452909945293044120497Escherichia coli APEC O1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_021066:3028421*3028421305110422684Raoultella ornithinolytica B6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_004631:1182883*1182883121459931717Salmonella enterica subsp. enterica serovar Typhi Ty2, complete1e-0869.9BLASTN svgBLASTP svg
NC_009648:293052*29305232674733696Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_003197:1320861*1320861134738426524Salmonella typhimurium LT2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str7e-0763.9BLASTN svgBLASTP svg
NC_014932:1232346*1232346130968277337Bartonella clarridgeiae 73, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020063:2449554*2449554247289823345Enterobacteriaceae bacterium strain FGI 57, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_020064:27798642779864280221322350Serratia marcescens FGI94, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012880:2871480*2871480289700125522Dickeya dadantii Ech703, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008686:50750*507507732426575Paracoccus denitrificans PD1222 chromosome 1, complete sequence3e-0661.9BLASTN svgBLASTP svg