Pre_GI: BLASTN Hits

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Query: NC_008563:318993 Escherichia coli APEC O1, complete genome

Start: 318993, End: 362583, Length: 43591

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome063290BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome062390BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome061100BLASTN svgBLASTP svg
NC_009800:349592*34959238017230581Escherichia coli HS, complete genome024180BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome016450BLASTN svgBLASTP svg
NC_011751:348000*34800037070122702Escherichia coli UMN026 chromosome, complete genome014770BLASTN svgBLASTP svg
NC_010473:27994827994830350723560Escherichia coli str. K-12 substr. DH10B, complete genome014130BLASTN svgBLASTP svg
NC_000913:303719*30371932647122753Escherichia coli K12, complete genome014130BLASTN svgBLASTP svg
AC_000091:30371930371932647122753Escherichia coli W3110 DNA, complete genome014130BLASTN svgBLASTP svg
NC_020063:3690308*3690308375363663329Enterobacteriaceae bacterium strain FGI 57, complete genome05697BLASTN svgBLASTP svg
CU928145:29908029908032372424645Escherichia coli 55989 chromosome, complete genome04522BLASTN svgBLASTP svg
NC_011748:29908029908032372424645Escherichia coli 55989, complete genome04522BLASTN svgBLASTP svg
NC_011740:27374672737467275914021674Escherichia fergusonii ATCC 35469, complete genome03945BLASTN svgBLASTP svg
NC_013592:32128343212834324883336000Dickeya dadantii Ech586, complete genome01142BLASTN svgBLASTP svg
NC_020260:19933441993344201786024517Cronobacter sakazakii Sp291, complete genome0755BLASTN svgBLASTP svg
NC_020211:16210001621000164274521746Serratia marcescens WW4, complete genome0696BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome0682BLASTN svgBLASTP svg
NC_009778:19562251956225198255126327Enterobacter sakazakii ATCC BAA-894, complete genome3e-174620BLASTN svgBLASTP svg
NC_014840:76232762329583419603Pantoea sp. At-9b plasmid pPAT9B03, complete sequence4e-124454BLASTN svgBLASTP svg
NC_014562:16982531698253172164923397Pantoea vagans C9-1 chromosome, complete genome3e-121444BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome8e-110406BLASTN svgBLASTP svg
NC_021066:37694053769405379116821764Raoultella ornithinolytica B6, complete genome4e-87331BLASTN svgBLASTP svg
NC_011080:17500001750000177244622447Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-74289BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,3e-72281BLASTN svgBLASTP svg
NC_004631:16235111623511164614622636Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-72281BLASTN svgBLASTP svg
NC_003198:13368941336894136036523472Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-72281BLASTN svgBLASTP svg
NC_006511:12731621273162129663123470Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC7e-70274BLASTN svgBLASTP svg
NC_006905:17660001766000178860222603Salmonella enterica subsp. enterica serovar Choleraesuis str2e-67266BLASTN svgBLASTP svg
NC_015567:1206727*1206727124209935373Serratia sp. AS9 chromosome, complete genome7e-67264BLASTN svgBLASTP svg
NC_015566:1206500*1206500124185935360Serratia sp. AS12 chromosome, complete genome7e-67264BLASTN svgBLASTP svg
NC_003197:17536631753663177609922437Salmonella typhimurium LT2, complete genome4e-65258BLASTN svgBLASTP svg
NC_013717:572657263053624811Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence6e-58234BLASTN svgBLASTP svg
NC_012917:2921932*2921932295050128570Pectobacterium carotovorum subsp. carotovorum PC1, complete genome9e-48200BLASTN svgBLASTP svg
NC_013508:34361734361737314529529Edwardsiella tarda EIB202, complete genome1e-43186BLASTN svgBLASTP svg
NC_004547:1970686*1970686199651325828Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-40176BLASTN svgBLASTP svg
NC_014532:988351*988351100759919249Halomonas elongata DSM 2581, complete genome3e-38168BLASTN svgBLASTP svg
NC_002695:30193930193932873026792Escherichia coli O157:H7 str. Sakai, complete genome4e-31145BLASTN svgBLASTP svg
NC_002655:30194030194032759925660Escherichia coli O157:H7 EDL933, complete genome4e-31145BLASTN svgBLASTP svg
NC_020181:96959996959999375524157Enterobacter aerogenes EA1509E, complete genome3e-29139BLASTN svgBLASTP svg
NC_015663:44479844447984447024622263Enterobacter aerogenes KCTC 2190 chromosome, complete genome3e-29139BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome3e-29139BLASTN svgBLASTP svg
NC_014500:3023762*3023762306170037939Dickeya dadantii 3937 chromosome, complete genome3e-23119BLASTN svgBLASTP svg
NC_011080:61042861042863159921172Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-1489.7BLASTN svgBLASTP svg
NC_010102:24954412495441251396918529Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-1489.7BLASTN svgBLASTP svg
NC_004631:23663352366335238728320949Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-1489.7BLASTN svgBLASTP svg
NC_003198:598000*59800061851020511Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-1489.7BLASTN svgBLASTP svg
NC_005966:18320661832066185759025525Acinetobacter sp. ADP1, complete genome4e-1385.7BLASTN svgBLASTP svg
CU928160:4570498*4570498461509944602Escherichia coli IAI1 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_008563:49051864905186492360518420Escherichia coli APEC O1, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_011750:43900004390000444275952760Escherichia coli IAI39 chromosome, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_003197:60604860604862559319546Salmonella typhimurium LT2, complete genome6e-1281.8BLASTN svgBLASTP svg
NC_006511:2251022*2251022227421723196Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC6e-1281.8BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str6e-1281.8BLASTN svgBLASTP svg
NC_011083:654479*65447967531220834Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,6e-1281.8BLASTN svgBLASTP svg
NC_011149:58889558889560977120877Salmonella enterica subsp. enterica serovar Agona str. SL483,6e-1281.8BLASTN svgBLASTP svg
NC_014550:786692*78669281013423443Arthrobacter arilaitensis Re117, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004431:51233255123325514909025766Escherichia coli CFT073, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_009800:2083465*2083465210667323209Escherichia coli HS, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_009800:4529504*4529504454809918596Escherichia coli HS, complete genome3e-1075.8BLASTN svgBLASTP svg
NC_011751:4293966*4293966431867224707Escherichia coli UMN026 chromosome, complete genome3e-1075.8BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_010498:49306494930649495591925271Escherichia coli SMS-3-5, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_011750:49780004978000500028022281Escherichia coli IAI39 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
NC_011751:23270142327014235440227389Escherichia coli UMN026 chromosome, complete genome8e-0867.9BLASTN svgBLASTP svg
CP002185:2181936*2181936220473822803Escherichia coli W, complete genome3e-0765.9BLASTN svgBLASTP svg
CP002516:1902431*1902431192618823758Escherichia coli KO11, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_010468:1816359*1816359186342947071Escherichia coli ATCC 8739, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013159:34235003423500344676323264Saccharomonospora viridis DSM 43017, complete genome3e-0765.9BLASTN svgBLASTP svg
NC_013501:176073*17607320175825686Rhodothermus marinus DSM 4252, complete genome1e-0663.9BLASTN svgBLASTP svg
CP002185:47918114791811481779025980Escherichia coli W, complete genome5e-0661.9BLASTN svgBLASTP svg
CP002516:41991334199133422817229040Escherichia coli KO11, complete genome5e-0661.9BLASTN svgBLASTP svg
CP002797:46563274656327468071624390Escherichia coli NA114, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_000913:45282784528278455238424107Escherichia coli K12, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_002695:5381576*5381576540611824543Escherichia coli O157:H7 str. Sakai, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_011751:50705975070597508906918473Escherichia coli UMN026 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
NC_015683:2176156*2176156219839422239Corynebacterium ulcerans BR-AD22 chromosome, complete genome5e-0661.9BLASTN svgBLASTP svg
AC_000091:45349354534935455904124107Escherichia coli W3110 DNA, complete genome5e-0661.9BLASTN svgBLASTP svg