Pre_GI: OUP Neighbours

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Query: NC_008563:3119284 Escherichia coli APEC O1, complete genome

D: 31.9127

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

Number of Neighbours: 67




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_014561:153143Pantoea vagans C9-1 plasmid pPag1, complete sequence75.4963 %Subject ←→ Query28.1767
NC_010465:429095Yersinia pseudotuberculosis YPIII, complete genome78.8266 %Subject ←→ Query29.1646
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome76.7341 %Subject ←→ Query29.5112
NC_003143:4006884Yersinia pestis CO92, complete genome79.4485 %Subject ←→ Query29.6176
NC_008149:4053363Yersinia pestis Nepal516, complete genome76.6575 %Subject ←→ Query30.0006
NC_004088:266543Yersinia pestis KIM, complete genome76.5564 %Subject ←→ Query30.0081
NC_006155:4302826Yersinia pseudotuberculosis IP 32953, complete genome79.663 %Subject ←→ Query30.1556
NC_010634:4234932Yersinia pseudotuberculosis PB1/+, complete genome78.7377 %Subject ←→ Query30.3016
NC_003277:22257Salmonella typhimurium LT2 plasmid pSLT, complete sequence78.6642 %Subject ←→ Query31.1132
NC_015663:1902344*Enterobacter aerogenes KCTC 2190 chromosome, complete genome77.405 %Subject ←→ Query31.1284
NC_007384:1763375Shigella sonnei Ss046, complete genome81.299 %Subject ←→ Query33.4012
NC_012912:2285778Dickeya zeae Ech1591, complete genome77.0588 %Subject ←→ Query33.4887
NC_014562:1698253Pantoea vagans C9-1 chromosome, complete genome76.0662 %Subject ←→ Query33.9839
NC_004547:3817656Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.7384 %Subject ←→ Query34.15
NC_014562:1883517*Pantoea vagans C9-1 chromosome, complete genome76.2898 %Subject ←→ Query34.2182
CU928160:256932Escherichia coli IAI1 chromosome, complete genome81.2377 %Subject ←→ Query34.5956
NC_003198:3042000*Salmonella enterica subsp. enterica serovar Typhi str. CT18,77.3254 %Subject ←→ Query34.7033
NC_014121:1038554Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete77.2733 %Subject ←→ Query34.8127
NC_013956:4579759Pantoea ananatis LMG 20103 chromosome, complete genome82.7727 %Subject ←→ Query34.8158
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome78.2506 %Subject ←→ Query34.9445
NC_010694:3055403Erwinia tasmaniensis, complete genome77.7267 %Subject ←→ Query35.0644
NC_014305:126029Erwinia billingiae Eb661 plasmid pEB170, complete sequence75.4473 %Subject ←→ Query35.5879
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.4351 %Subject ←→ Query35.7065
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete75.3646 %Subject ←→ Query35.8098
NC_009832:1946401Serratia proteamaculans 568, complete genome78.5355 %Subject ←→ Query35.908
NC_004631:685357*Salmonella enterica subsp. enterica serovar Typhi Ty2, complete79.4853 %Subject ←→ Query36.1113
NC_013961:3083816Erwinia amylovora, complete genome79.4761 %Subject ←→ Query36.2172
NC_007608:97092Shigella boydii Sb227 plasmid pSB4_227, complete sequence78.4252 %Subject ←→ Query36.3239
NC_009801:3374501*Escherichia coli E24377A, complete genome76.4737 %Subject ←→ Query36.3653
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.5944 %Subject ←→ Query36.3874
NC_004431:1352906Escherichia coli CFT073, complete genome80.5453 %Subject ←→ Query36.4239
NC_002695:2158314Escherichia coli O157:H7 str. Sakai, complete genome81.1918 %Subject ←→ Query36.4725
NC_007712:2287053Sodalis glossinidius str. 'morsitans', complete genome75.4688 %Subject ←→ Query36.533
AP010958:1472506Escherichia coli O103:H2 str. 12009 DNA, complete genome82.4081 %Subject ←→ Query36.7127
NC_011751:1377457Escherichia coli UMN026 chromosome, complete genome80.913 %Subject ←→ Query36.813
NC_008150:1420825*Yersinia pestis Antiqua, complete genome75.1471 %Subject ←→ Query37.0184
NC_005810:1794490*Yersinia pestis biovar Microtus str. 91001, complete genome75.3922 %Subject ←→ Query37.035
NC_003198:2297837Salmonella enterica subsp. enterica serovar Typhi str. CT18,78.5631 %Subject ←→ Query37.159
NC_002695:2893951Escherichia coli O157:H7 str. Sakai, complete genome80.0184 %Subject ←→ Query37.275
NC_003143:2137945*Yersinia pestis CO92, complete genome75.0123 %Subject ←→ Query37.3318
NC_011080:2342672Salmonella enterica subsp. enterica serovar Newport str. SL254,78.1464 %Subject ←→ Query37.4165
NC_010694:2189652*Erwinia tasmaniensis, complete genome76.7096 %Subject ←→ Query37.4179
NC_009648:3476000Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome86.5104 %Subject ←→ Query37.4593
NC_006905:2355290Salmonella enterica subsp. enterica serovar Choleraesuis str78.5202 %Subject ←→ Query37.6094
NC_011750:1931384Escherichia coli IAI39 chromosome, complete genome81.1213 %Subject ←→ Query37.6581
NC_012912:647369Dickeya zeae Ech1591, complete genome76.7402 %Subject ←→ Query37.7391
NC_011149:2294500Salmonella enterica subsp. enterica serovar Agona str. SL483,76.2898 %Subject ←→ Query38.0253
NC_007385:157516Shigella sonnei Ss046 plasmid pSS_046, complete sequence79.4945 %Subject ←→ Query38.0958
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome77.0956 %Subject ←→ Query38.2235
NC_002655:1909139Escherichia coli O157:H7 EDL933, complete genome80.6679 %Subject ←→ Query38.4667
NC_011750:919953Escherichia coli IAI39 chromosome, complete genome78.4681 %Subject ←→ Query38.6045
NC_013282:1256769Cronobacter turicensis, complete genome75.6556 %Subject ←→ Query38.8742
NC_011750:2009889Escherichia coli IAI39 chromosome, complete genome79.9663 %Subject ←→ Query39.0625
NC_014228:2883500Xenorhabdus nematophila ATCC 19061, complete genome77.9228 %Subject ←→ Query39.0811
NC_014228:3022903Xenorhabdus nematophila ATCC 19061, complete genome75.0368 %Subject ←→ Query39.1304
NC_012779:3176820*Edwardsiella ictaluri 93-146, complete genome76.4522 %Subject ←→ Query39.7546
NC_012779:305969Edwardsiella ictaluri 93-146, complete genome78.2414 %Subject ←→ Query39.836
NC_012779:2281700*Edwardsiella ictaluri 93-146, complete genome77.6072 %Subject ←→ Query40.1776
NC_014121:1822895Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete84.2126 %Subject ←→ Query40.59
NC_013592:1424560Dickeya dadantii Ech586, complete genome76.4614 %Subject ←→ Query41.2418
NC_014228:3282500Xenorhabdus nematophila ATCC 19061, complete genome78.9093 %Subject ←→ Query41.4806
NC_012779:2928000*Edwardsiella ictaluri 93-146, complete genome77.7574 %Subject ←→ Query41.5453
NC_013508:876431*Edwardsiella tarda EIB202, complete genome75.4289 %Subject ←→ Query41.7282
NC_013283:113660Cronobacter turicensis plasmid pCTU1, complete sequence77.1048 %Subject Query42.151
NC_010660:175200*Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence77.932 %Subject Query46.3542
NC_009648:1487692Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome80.7138 %Subject Query49.6231
NC_009648:2465613*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome79.4179 %Subject Query50.7802