Pre_GI: BLASTN Hits

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Query: NC_008563:1505405 Escherichia coli APEC O1, complete genome

Start: 1505405, End: 1540061, Length: 34657

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (serovar O1) is an avian pathogenic strain and causes respiratory, blood, and enteric infections primarily in poultry. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
AP010958:60471960471962691322195Escherichia coli O103:H2 str. 12009 DNA, complete genome04460BLASTN svgBLASTP svg
NC_002695:91750991750994039822890Escherichia coli O157:H7 str. Sakai, complete genome04423BLASTN svgBLASTP svg
NC_002655:91965491965493956619913Escherichia coli O157:H7 EDL933, complete genome04333BLASTN svgBLASTP svg
AP010958:86786986786989060722739Escherichia coli O103:H2 str. 12009 DNA, complete genome04318BLASTN svgBLASTP svg
NC_011751:68041768041770234121925Escherichia coli UMN026 chromosome, complete genome03925BLASTN svgBLASTP svg
NC_008563:20413452041345206368122337Escherichia coli APEC O1, complete genome03901BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome03782BLASTN svgBLASTP svg
NC_004431:30126683012668303118918522Escherichia coli CFT073, complete genome03751BLASTN svgBLASTP svg
AP010958:2134556*2134556215269018135Escherichia coli O103:H2 str. 12009 DNA, complete genome03695BLASTN svgBLASTP svg
NC_011750:19313841931384195623124848Escherichia coli IAI39 chromosome, complete genome03223BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome02418BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome02403BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome02327BLASTN svgBLASTP svg
NC_014121:1848971*1848971187217723207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01489BLASTN svgBLASTP svg
NC_013716:1756545*1756545177694320399Citrobacter rodentium ICC168, complete genome01453BLASTN svgBLASTP svg
NC_011149:1429523*1429523149808768565Salmonella enterica subsp. enterica serovar Agona str. SL483,01342BLASTN svgBLASTP svg
NC_010473:62381062381065051726708Escherichia coli str. K-12 substr. DH10B, complete genome01340BLASTN svgBLASTP svg
NC_000913:558920*55892058509926180Escherichia coli K12, complete genome01340BLASTN svgBLASTP svg
AC_000091:55892055892058720428285Escherichia coli W3110 DNA, complete genome01340BLASTN svgBLASTP svg
NC_010473:498252*49825252418825937Escherichia coli str. K-12 substr. DH10B, complete genome01239BLASTN svgBLASTP svg
NC_002695:28939512893951291868324733Escherichia coli O157:H7 str. Sakai, complete genome01174BLASTN svgBLASTP svg
NC_002695:26554452655445267786922425Escherichia coli O157:H7 str. Sakai, complete genome01140BLASTN svgBLASTP svg
NC_002695:21583142158314218207123758Escherichia coli O157:H7 str. Sakai, complete genome01140BLASTN svgBLASTP svg
NC_002655:27306592730659276187131213Escherichia coli O157:H7 EDL933, complete genome01140BLASTN svgBLASTP svg
NC_002655:19091391909139193312123983Escherichia coli O157:H7 EDL933, complete genome01104BLASTN svgBLASTP svg
AP010958:14725061472506149531022805Escherichia coli O103:H2 str. 12009 DNA, complete genome01080BLASTN svgBLASTP svg
AP010958:13057121305712133215626445Escherichia coli O103:H2 str. 12009 DNA, complete genome01068BLASTN svgBLASTP svg
NC_004431:13529061352906137651123606Escherichia coli CFT073, complete genome0868BLASTN svgBLASTP svg
NC_020063:2449554*2449554247289823345Enterobacteriaceae bacterium strain FGI 57, complete genome0850BLASTN svgBLASTP svg
NC_011750:91995391995393907219120Escherichia coli IAI39 chromosome, complete genome0846BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome0842BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome0726BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome0684BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome0684BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome0684BLASTN svgBLASTP svg
NC_010473:1493983*1493983151640422422Escherichia coli str. K-12 substr. DH10B, complete genome3e-167597BLASTN svgBLASTP svg
NC_000913:1404000*1404000142700823009Escherichia coli K12, complete genome3e-167597BLASTN svgBLASTP svg
AC_000091:1407693*1407693143069823006Escherichia coli W3110 DNA, complete genome3e-167597BLASTN svgBLASTP svg
CP002516:2580774*2580774260629825525Escherichia coli KO11, complete genome2e-162581BLASTN svgBLASTP svg
CP002185:1493280*1493280151559922320Escherichia coli W, complete genome2e-162581BLASTN svgBLASTP svg
NC_011751:13774571377457140058923133Escherichia coli UMN026 chromosome, complete genome1e-160575BLASTN svgBLASTP svg
AP010958:22729192272919229869725779Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-131478BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome2e-119438BLASTN svgBLASTP svg
NC_011080:27224922722492274217119680Salmonella enterica subsp. enterica serovar Newport str. SL254,9e-109402BLASTN svgBLASTP svg
NC_003197:27207262720726274079420069Salmonella typhimurium LT2, complete genome9e-109402BLASTN svgBLASTP svg
NC_006905:13424741342474137811135638Salmonella enterica subsp. enterica serovar Choleraesuis str9e-106392BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome2e-69272BLASTN svgBLASTP svg
CP002797:4812799*4812799483159918801Escherichia coli NA114, complete genome4e-68268BLASTN svgBLASTP svg
NC_004547:91355391355395334239790Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-55226BLASTN svgBLASTP svg
NC_013716:12989321298932132714328212Citrobacter rodentium ICC168, complete genome5e-55224BLASTN svgBLASTP svg
NC_010498:301000*30100034338442385Escherichia coli SMS-3-5, complete genome1e-49206BLASTN svgBLASTP svg
NC_012917:26410002641000266615925160Pectobacterium carotovorum subsp. carotovorum PC1, complete genome2e-48202BLASTN svgBLASTP svg
NC_013508:18628961862896188607023175Edwardsiella tarda EIB202, complete genome6e-33151BLASTN svgBLASTP svg
CU928145:29908029908032372424645Escherichia coli 55989 chromosome, complete genome2e-32149BLASTN svgBLASTP svg
NC_007946:289425*28942536040270978Escherichia coli UTI89, complete genome2e-32149BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome2e-32149BLASTN svgBLASTP svg
NC_011748:29908029908032372424645Escherichia coli 55989, complete genome2e-32149BLASTN svgBLASTP svg
NC_004431:364000*36400042492660927Escherichia coli CFT073, complete genome9e-32147BLASTN svgBLASTP svg
NC_009648:1541699*1541699160010958411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome9e-29137BLASTN svgBLASTP svg
NC_011149:11106421110642113231521674Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-23117BLASTN svgBLASTP svg
NC_004631:948054*94805498991041857Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-20109BLASTN svgBLASTP svg
AC_000091:2027648*2027648207009942452Escherichia coli W3110 DNA, complete genome3e-19105BLASTN svgBLASTP svg
NC_000913:2028472*2028472205003821567Escherichia coli K12, complete genome3e-19105BLASTN svgBLASTP svg
NC_006905:17264161726416175294526530Salmonella enterica subsp. enterica serovar Choleraesuis str3e-19105BLASTN svgBLASTP svg
NC_010473:2119480*2119480215635336874Escherichia coli str. K-12 substr. DH10B, complete genome3e-19105BLASTN svgBLASTP svg
NC_011083:17613521761352178789226541Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-19105BLASTN svgBLASTP svg
NC_011080:17096121709612173614226531Salmonella enterica subsp. enterica serovar Newport str. SL254,1e-18103BLASTN svgBLASTP svg
NC_004631:15870001587000160727820279Salmonella enterica subsp. enterica serovar Typhi Ty2, complete7e-1797.6BLASTN svgBLASTP svg
NC_003198:19082381908238193517826941Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-1695.6BLASTN svgBLASTP svg
NC_008563:14755001475500149389218393Escherichia coli APEC O1, complete genome3e-1695.6BLASTN svgBLASTP svg
NC_010067:1655815*1655815168162625812Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete3e-1695.6BLASTN svgBLASTP svg
NC_015663:4906652*4906652493024623595Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_013716:2139952*2139952219678356832Citrobacter rodentium ICC168, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_009800:20493462049346207518725842Escherichia coli HS, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_002655:2142587*2142587216371121125Escherichia coli O157:H7 EDL933, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_002695:1929215*1929215195011620902Escherichia coli O157:H7 str. Sakai, complete genome7e-1487.7BLASTN svgBLASTP svg
NC_014121:2745097*2745097276822023124Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete7e-1487.7BLASTN svgBLASTP svg
NC_015062:58826588268328124456Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence7e-1177.8BLASTN svgBLASTP svg
NC_006905:368942*36894239327424333Salmonella enterica subsp. enterica serovar Choleraesuis str1e-0973.8BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_004337:20359452035945205669020746Shigella flexneri 2a str. 301, complete genome4e-0971.9BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_008563:28713628713630584318708Escherichia coli APEC O1, complete genome2e-0869.9BLASTN svgBLASTP svg
NC_002655:20150002015000203595420955Escherichia coli O157:H7 EDL933, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_002695:20565452056545207693920395Escherichia coli O157:H7 str. Sakai, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_004741:18230001823000184104318044Shigella flexneri 2a str. 2457T, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_008258:17846371784637180559020954Shigella flexneri 5 str. 8401, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_009348:16124416124417922017977Aeromonas salmonicida subsp. salmonicida A449, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_010498:17004471700447171902918583Escherichia coli SMS-3-5, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_011750:18099431809943183281122869Escherichia coli IAI39 chromosome, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_013961:2370994*2370994240176230769Erwinia amylovora, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_020064:27798642779864280221322350Serratia marcescens FGI94, complete genome7e-0867.9BLASTN svgBLASTP svg
NC_015062:999699996912011920151Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence3e-0765.9BLASTN svgBLASTP svg
CU928160:2091249*2091249211444123193Escherichia coli IAI1 chromosome, complete genome1e-0663.9BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-0663.9BLASTN svgBLASTP svg
CU928145:82436782436784378119415Escherichia coli 55989 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_000913:1625500*1625500165193926440Escherichia coli K12, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_004431:14016811401681142114919469Escherichia coli CFT073, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_007946:1239278*1239278125938320106Escherichia coli UTI89, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_008563:1175035*1175035119859923565Escherichia coli APEC O1, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011748:82436782436784378119415Escherichia coli 55989, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_011751:643976*64397666569121716Escherichia coli UMN026 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013192:374000*37400039364719648Leptotrichia buccalis DSM 1135, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013716:5141269*5141269517008828820Citrobacter rodentium ICC168, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015061:27708562770856279559924744Rahnella sp. Y9602 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
AC_000091:16270491627049165562928581Escherichia coli W3110 DNA, complete genome4e-0661.9BLASTN svgBLASTP svg