Pre_GI: BLASTP Hits

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Query: NC_010658:1193225:1202365 Shigella boydii CDC 3083-94, complete genome

Start: 1202365, End: 1202769, Length: 405

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:2786000:279989027998902800294405Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-74277
NC_010468:2699000:271326527132652713669405Escherichia coli ATCC 8739, complete genomeprotein of unknown function DUF13982e-74277
CU928145:1300863:130774213077421308146405Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-74277
AC_000091:1191353:121428012142801214684405Escherichia coli W3110 DNA, complete genomehypothetical protein2e-74277
NC_009800:1254409:125992112599211260325405Escherichia coli HS, complete genomehypothetical protein2e-74277
NC_009801:1296488:130336713033671303771405Escherichia coli E24377A, complete genomehypothetical protein2e-74277
CP002185:1298675:130555413055541305958405Escherichia coli W, complete genomehypothetical protein2e-74277
NC_011745:1287714:129500912950091295413405Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-74277
NC_011742:1221416:122994712299471230351405Escherichia coli S88 chromosome, complete genomehypothetical protein2e-74277
NC_008253:1228485:123567712356771236081405Escherichia coli 536, complete genomehypothetical protein YcgX2e-74277
NC_008563:1217804:122633512263351226739405Escherichia coli APEC O1, complete genomehypothetical protein2e-74277
NC_004431:1443968:145249314524931452897405Escherichia coli CFT073, complete genomeHypothetical protein ycgX2e-74277
NC_007946:1280508:128903912890391289443405Escherichia coli UTI89, complete genomehypothetical protein YcgX2e-74277
AP010958:1339263:134614213461421346546405Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein2e-74277
NC_000913:1188999:121192612119261212330405Escherichia coli K12, complete genomehypothetical protein2e-74277
NC_011748:1300863:130774213077421308146405Escherichia coli 55989, complete genomehypothetical protein2e-74277
NC_013364:1477248:150754415075441507948405Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-74277
NC_013361:1634226:163973116397311640135405Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-74277
NC_013353:1339263:134614213461421346546405Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-74277
NC_012967:1205985:121286412128641213268405Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein2e-74277
NC_012947:2566754:258111925811192581523405Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein2e-74277
NC_012759:1093764:110064711006471101051405Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-74277
NC_011741:1232510:123938912393891239793405Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-74277
NC_011415:1273551:128043012804301280834405Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-74277
CU928160:1232510:123938912393891239793405Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein2e-74277
NC_010473:1245284:125216712521671252571405Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-74277
NC_011751:1446073:145896814589681459372405Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-74277
CP002516:2786000:279989027998902800294405Escherichia coli KO11, complete genomeprotein of unknown function DUF13982e-74277
NC_013941:1460144:146497214649721465376405Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-74275
NC_011601:1315746:132176613217661322170405Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein8e-74275
NC_010498:1995500:200860420086042009008405Escherichia coli SMS-3-5, complete genomehypothetical protein1e-73274
NC_011750:1978801:199092119909211991325405Escherichia coli IAI39 chromosome, complete genomehypothetical protein1e-73274
NC_011748:1773642:178138417813841781794411Escherichia coli 55989, complete genomeconserved hypothetical protein; Qin prophage3e-31133
CU928145:1773642:178138417813841781794411Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein; Qin prophage3e-31133
NC_021066:1778000:178756617875661787970405Raoultella ornithinolytica B6, complete genomehypothetical protein3e-30130
NC_011750:1565000:157568015756801576090411Escherichia coli IAI39 chromosome, complete genomehypothetical protein2e-30130
CP002185:1770815:177704117770411777451411Escherichia coli W, complete genomeQin prophage; predicted protein2e-30130
NC_010473:1712984:172469617246961725106411Escherichia coli str. K-12 substr. DH10B, complete genomeQin prophage; predicted protein2e-30130
CU928160:1668842:167506816750681675478411Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; Qin prophage2e-30130
AC_000091:1627049:163876116387611639171411Escherichia coli W3110 DNA, complete genomehypothetical protein2e-30130
NC_000913:1625500:163507116350711635481411Escherichia coli K12, complete genomeQin prophage; predicted protein2e-30130
NC_011741:1668842:167506816750681675478411Escherichia coli IAI1 chromosome, complete genomehypothetical protein2e-30130
NC_012759:1517500:152713015271301527540411Escherichia coli BW2952 chromosome, complete genomeQin prophage protein2e-30130
NC_011751:643976:664741664741665166426Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-29128
NC_011748:824367:840511840511840936426Escherichia coli 55989, complete genomeconserved hypothetical protein from phage origin2e-29127
CU928145:824367:840511840511840936426Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein from phage origin2e-29127
NC_000913:558920:578407578407578817411Escherichia coli K12, complete genomeDLP12 prophage; predicted protein7e-28122
NC_010473:623810:630999630999631409411Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted protein7e-28122
NC_010473:498252:517739517739518149411Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted protein7e-28122
AC_000091:558920:578407578407578817411Escherichia coli W3110 DNA, complete genomehypothetical protein7e-28122
NC_012759:461680:481167481167481577411Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage protein7e-28122
NC_011751:1859606:186694618669461867371426Escherichia coli UMN026 chromosome, complete genomehypothetical protein1e-26117
NC_013361:2138716:214612021461202146530411Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-26117
NC_006905:1961774:196936819693681969763396Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-25114
NC_011094:1923870:193143019314301931825396Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-25114
NC_004631:1091303:110572211057221106117396Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein3e-25113
NC_003198:1867456:187501518750151875410396Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein3e-25113
NC_003197:1945858:195341819534181953813396Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein3e-25113
NC_016810:1903426:191098619109861911381396Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-25113
NC_016856:1957263:196482319648231965218396Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein3e-25113
NC_016857:1903426:191098619109861911381396Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein3e-25113
NC_016863:1905454:191301419130141913409396Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein3e-25113
NC_017046:1902788:191034819103481910743396Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-25113
NC_016832:1090274:110469411046941105074381Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein9e-25112
NC_011083:1993672:200124120012412001621381Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative cytoplasmic protein8e-25112
NC_016831:1690811:169838116983811698761381Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein8e-25112
NC_016860:1943203:195077819507781951158381Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-25112
NC_011149:1236689:124681812468181247198381Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein6e-25112
NC_011080:1944226:195180119518011952181381Salmonella enterica subsp. enterica serovar Newport str. SL254,putative cytoplasmic protein6e-25112
NC_011147:1057259:108232610823261082733408Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-24110
NC_014618:4114004:411737241173724117767396Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-23107
NC_020063:2449554:245807424580742458490417Enterobacteriaceae bacterium strain FGI 57, complete genomephage envelope protein1e-1994.7
NC_011205:1391971:141394514139451414271327Salmonella enterica subsp. enterica serovar Dublin str. CT_020218532e-1994.7