Pre_GI Gene

Some Help

Host: NC_006905 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_006905:1961774 Salmonella enterica subsp. enterica serovar Choleraesuis str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
196056419618471284putative inner membrane proteinQuickGO ontologyBLASTP
196177419644492676putative inner membrane proteinQuickGO ontologyBLASTP
196442519659661542paral putative rRNA methyltransferaseQuickGO ontologyBLASTP
19660811966320240putative cytoplasmic proteinQuickGO ontologyBLASTP
19664301966621192hypothetical proteinBLASTP
19666401967308669serinethreonine protein phosphataseQuickGO ontologyBLASTP
19675131967677165putative inner membrane proteinQuickGO ontologyBLASTP
19677391967888150hypothetical proteinBLASTP
19679621968684723TypeIII-secreted protein effector invasion-associated proteinQuickGO ontologyBLASTP
19693681969763396putative cytoplasmic proteinQuickGO ontologyBLASTP
19700911970567477hypothetical proteinBLASTP
19709401971359420putative acetyltransferaseQuickGO ontologyBLASTP
19714881971682195hypothetical proteinBLASTP
19719051972051147hypothetical proteinBLASTP
19721641972304141putative cytoplasmic proteinQuickGO ontologyBLASTP
19726411972781141putative transposaseQuickGO ontologyBLASTP
19737471974115369putative cytoplasmic proteinQuickGO ontologyBLASTP
19745501974717168error-prone repair component of DNA polymerase V with UmuDQuickGO ontologyBLASTP
19747341975258525putative fimbriae usherQuickGO ontologyBLASTP
19760491976963915PhoPQ-activated gene predicted integral membrane proteinQuickGO ontologyBLASTP
19770961977254159putative inner membrane proteinQuickGO ontologyBLASTP
19772641977878615putative inner membrane proteinQuickGO ontologyBLASTP
19780781978269192putative inner membrane lipoproteinQuickGO ontologyBLASTP
197828719802661980putative hydrolaseQuickGO ontologyBLASTP
198066219817921131hypothetical proteinBLASTP
19820791982474396putative DNA-binding proteinQuickGO ontologyBLASTP
19825381982861324RecT proteinQuickGO ontologyBLASTP
19826531982994342RecT proteinQuickGO ontologyBLASTP